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NCBI C++ ToolKit: CSubjectMap_Factory_TBase Class Reference

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To be merged with CSubjectMap_Factory_Base. More...

To be merged with CSubjectMap_Factory_Base.

Definition at line 311 of file dbindex_factory.cpp.

◆ TChunks ◆ TSeqInfo ◆ TSeqSeg ◆ CSubjectMap_Factory_TBase() CSubjectMap_Factory_TBase::CSubjectMap_Factory_TBase ( const TOptions &  options ) inline

Object constructor.

Parameters
options index creation options

Definition at line 318 of file dbindex_factory.cpp.

◆ AddSequenceChunk() bool CSubjectMap_Factory_TBase::AddSequenceChunk ( TSeqStore::size_type  seq_off )

Append the next chunk of the input sequence currently being processed to the subject map.

This function only computes the valid segments and decides whether iteration over chunks is complete.

The return value of false should be used as iteration termination condition.

Parameters
seq_off The start of the chunk data.
Returns
true for success; false if no more chunks were available

Definition at line 714 of file dbindex_factory.cpp.

References base_value(), CSubjectMap_Factory_Base::c_chunk_, CSubjectMap_Factory_Base::c_seq_, CSubjectMap_Factory_Base::chunk_overlap_, CSubjectMap_Factory_Base::chunk_size_, CR, in(), CSubjectMap_Factory_Base::last_chunk_, lc, letter(), CSubjectMap_Factory_Base::mask_helper_, min(), and CSubjectMap_Factory_Base::subjects_.

Referenced by CSubjectMap_Factory::AddSequenceChunk().

◆ Commit() void CSubjectMap_Factory_TBase::Commit ( void  ) ◆ GetLastSequence() TSeqNum CSubjectMap_Factory_TBase::GetLastSequence ( ) const inline

Get the oid of the last processed sequence.

This function is used to get the oid of the last added subject sequence after the index has been grown to the target size.

Returns
oid of the last added (possibly partially) sequence

Definition at line 351 of file dbindex_factory.cpp.

References CSubjectMap_Factory_Base::subjects_.

◆ GetLastSequenceChunk() TSeqNum CSubjectMap_Factory_TBase::GetLastSequenceChunk ( ) const inline ◆ GetSeqInfo() ◆ LastGoodSequence() TSeqNum CSubjectMap_Factory_TBase::LastGoodSequence ( ) const inline ◆ RollBack() void CSubjectMap_Factory_TBase::RollBack ( ) ◆ Save() void CSubjectMap_Factory_TBase::Save ( CNcbiOstream &  os ) const ◆ total() TWord CSubjectMap_Factory_TBase::total ( ) const inline ◆ chunks_ TChunks CSubjectMap_Factory_TBase::chunks_ protected

The documentation for this class was generated from the following file:

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