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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/classCStatistics__Base.html below:

NCBI C++ ToolKit: CStatistics_Base Class Reference

enum class   E_memberIndex {
  e__allMandatory = 0 , e_db_num , e_db_len , e_hsp_len ,
  e_eff_space , e_kappa , e_lambda , e_entropy ,
  e__allMandatory = 0 , e_db_num , e_db_len , e_hsp_len ,
  e_eff_space , e_kappa , e_lambda , e_entropy
}   enum class   E_memberIndex {
  e__allMandatory = 0 , e_db_num , e_db_len , e_hsp_len ,
  e_eff_space , e_kappa , e_lambda , e_entropy ,
  e__allMandatory = 0 , e_db_num , e_db_len , e_hsp_len ,
  e_eff_space , e_kappa , e_lambda , e_entropy
}   typedef int  TDb_num   typedef Int8  TDb_len   typedef int  THsp_len   typedef double  TEff_space   typedef double  TKappa   typedef double  TLambda   typedef double  TEntropy   typedef Tparent::CMemberIndex< E_memberIndex, 8 >  TmemberIndex   typedef Int8  TDb_num   typedef Int8  TDb_len   typedef int  THsp_len   typedef Int8  TEff_space   typedef double  TKappa   typedef double  TLambda   typedef double  TEntropy   typedef Tparent::CMemberIndex< E_memberIndex, 8 >  TmemberIndex   enum   EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }   Control filling of newly allocated memory. More...
  typedef CObjectCounterLocker  TLockerType   Default locker type for CRef. More...
  typedef atomic< Uint8 >  TCounter   Counter type is CAtomiCounter. More...
  typedef Uint8  TCount   Alias for value type of counter. More...
    CStatistics_Base (void)   virtual  ~CStatistics_Base (void)     DECLARE_INTERNAL_TYPE_INFO ()   bool  IsSetDb_num (void) const   Number of sequences in BLAST db Check if a value has been assigned to Db_num data member. More...
  bool  CanGetDb_num (void) const   Check if it is safe to call GetDb_num method. More...
  void  ResetDb_num (void)   Reset Db_num data member. More...
  TDb_num  GetDb_num (void) const   Get the Db_num member data. More...
  void  SetDb_num (TDb_num value)   Assign a value to Db_num data member. More...
  TDb_num &  SetDb_num (void)   Assign a value to Db_num data member. More...
  bool  IsSetDb_len (void) const   Length of BLAST db Check if a value has been assigned to Db_len data member. More...
  bool  CanGetDb_len (void) const   Check if it is safe to call GetDb_len method. More...
  void  ResetDb_len (void)   Reset Db_len data member. More...
  TDb_len  GetDb_len (void) const   Get the Db_len member data. More...
  void  SetDb_len (TDb_len value)   Assign a value to Db_len data member. More...
  TDb_len &  SetDb_len (void)   Assign a value to Db_len data member. More...
  bool  IsSetHsp_len (void) const   Effective HSP length Check if a value has been assigned to Hsp_len data member. More...
  bool  CanGetHsp_len (void) const   Check if it is safe to call GetHsp_len method. More...
  void  ResetHsp_len (void)   Reset Hsp_len data member. More...
  THsp_len  GetHsp_len (void) const   Get the Hsp_len member data. More...
  void  SetHsp_len (THsp_len value)   Assign a value to Hsp_len data member. More...
  THsp_len &  SetHsp_len (void)   Assign a value to Hsp_len data member. More...
  bool  IsSetEff_space (void) const   Effective search space Check if a value has been assigned to Eff_space data member. More...
  bool  CanGetEff_space (void) const   Check if it is safe to call GetEff_space method. More...
  void  ResetEff_space (void)   Reset Eff_space data member. More...
  TEff_space  GetEff_space (void) const   Get the Eff_space member data. More...
  void  SetEff_space (TEff_space value)   Assign a value to Eff_space data member. More...
  TEff_space &  SetEff_space (void)   Assign a value to Eff_space data member. More...
  bool  IsSetKappa (void) const   Karlin-Altschul parameter K Check if a value has been assigned to Kappa data member. More...
  bool  CanGetKappa (void) const   Check if it is safe to call GetKappa method. More...
  void  ResetKappa (void)   Reset Kappa data member. More...
  TKappa  GetKappa (void) const   Get the Kappa member data. More...
  void  SetKappa (TKappa value)   Assign a value to Kappa data member. More...
  TKappa &  SetKappa (void)   Assign a value to Kappa data member. More...
  bool  IsSetLambda (void) const   Karlin-Altschul parameter Lambda Check if a value has been assigned to Lambda data member. More...
  bool  CanGetLambda (void) const   Check if it is safe to call GetLambda method. More...
  void  ResetLambda (void)   Reset Lambda data member. More...
  TLambda  GetLambda (void) const   Get the Lambda member data. More...
  void  SetLambda (TLambda value)   Assign a value to Lambda data member. More...
  TLambda &  SetLambda (void)   Assign a value to Lambda data member. More...
  bool  IsSetEntropy (void) const   Karlin-Altschul parameter H Check if a value has been assigned to Entropy data member. More...
  bool  CanGetEntropy (void) const   Check if it is safe to call GetEntropy method. More...
  void  ResetEntropy (void)   Reset Entropy data member. More...
  TEntropy  GetEntropy (void) const   Get the Entropy member data. More...
  void  SetEntropy (TEntropy value)   Assign a value to Entropy data member. More...
  TEntropy &  SetEntropy (void)   Assign a value to Entropy data member. More...
  virtual void  Reset (void)   Reset the whole object. More...
    CStatistics_Base (void)   virtual  ~CStatistics_Base (void)     DECLARE_INTERNAL_TYPE_INFO ()   bool  IsSetDb_num (void) const   Number of sequences in BLAST db Check if a value has been assigned to Db_num data member. More...
  bool  CanGetDb_num (void) const   Check if it is safe to call GetDb_num method. More...
  void  ResetDb_num (void)   Reset Db_num data member. More...
  TDb_num  GetDb_num (void) const   Get the Db_num member data. More...
  void  SetDb_num (TDb_num value)   Assign a value to Db_num data member. More...
  TDb_num &  SetDb_num (void)   Assign a value to Db_num data member. More...
  bool  IsSetDb_len (void) const   Length of BLAST db Check if a value has been assigned to Db_len data member. More...
  bool  CanGetDb_len (void) const   Check if it is safe to call GetDb_len method. More...
  void  ResetDb_len (void)   Reset Db_len data member. More...
  TDb_len  GetDb_len (void) const   Get the Db_len member data. More...
  void  SetDb_len (TDb_len value)   Assign a value to Db_len data member. More...
  TDb_len &  SetDb_len (void)   Assign a value to Db_len data member. More...
  bool  IsSetHsp_len (void) const   Effective HSP length Check if a value has been assigned to Hsp_len data member. More...
  bool  CanGetHsp_len (void) const   Check if it is safe to call GetHsp_len method. More...
  void  ResetHsp_len (void)   Reset Hsp_len data member. More...
  THsp_len  GetHsp_len (void) const   Get the Hsp_len member data. More...
  void  SetHsp_len (THsp_len value)   Assign a value to Hsp_len data member. More...
  THsp_len &  SetHsp_len (void)   Assign a value to Hsp_len data member. More...
  bool  IsSetEff_space (void) const   Effective search space Check if a value has been assigned to Eff_space data member. More...
  bool  CanGetEff_space (void) const   Check if it is safe to call GetEff_space method. More...
  void  ResetEff_space (void)   Reset Eff_space data member. More...
  TEff_space  GetEff_space (void) const   Get the Eff_space member data. More...
  void  SetEff_space (TEff_space value)   Assign a value to Eff_space data member. More...
  TEff_space &  SetEff_space (void)   Assign a value to Eff_space data member. More...
  bool  IsSetKappa (void) const   Karlin-Altschul parameter K Check if a value has been assigned to Kappa data member. More...
  bool  CanGetKappa (void) const   Check if it is safe to call GetKappa method. More...
  void  ResetKappa (void)   Reset Kappa data member. More...
  TKappa  GetKappa (void) const   Get the Kappa member data. More...
  void  SetKappa (TKappa value)   Assign a value to Kappa data member. More...
  TKappa &  SetKappa (void)   Assign a value to Kappa data member. More...
  bool  IsSetLambda (void) const   Karlin-Altschul parameter Lambda Check if a value has been assigned to Lambda data member. More...
  bool  CanGetLambda (void) const   Check if it is safe to call GetLambda method. More...
  void  ResetLambda (void)   Reset Lambda data member. More...
  TLambda  GetLambda (void) const   Get the Lambda member data. More...
  void  SetLambda (TLambda value)   Assign a value to Lambda data member. More...
  TLambda &  SetLambda (void)   Assign a value to Lambda data member. More...
  bool  IsSetEntropy (void) const   Karlin-Altschul parameter H Check if a value has been assigned to Entropy data member. More...
  bool  CanGetEntropy (void) const   Check if it is safe to call GetEntropy method. More...
  void  ResetEntropy (void)   Reset Entropy data member. More...
  TEntropy  GetEntropy (void) const   Get the Entropy member data. More...
  void  SetEntropy (TEntropy value)   Assign a value to Entropy data member. More...
  TEntropy &  SetEntropy (void)   Assign a value to Entropy data member. More...
  virtual void  Reset (void)   Reset the whole object. More...
    CSerialObject (void)   virtual  ~CSerialObject (void)   virtual const CTypeInfo *  GetThisTypeInfo (void) const =0   virtual void  Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive)   Set object to copy of another one. More...
  virtual bool  Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const   Check if both objects contain the same values. More...
  virtual void  DebugDump (CDebugDumpContext ddc, unsigned int depth) const   Define method for dumping debug information. More...
  void  ThrowUnassigned (TMemberIndex index) const   void  ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const   bool  HasNamespaceName (void) const   Check if object data type has namespace name. More...
  const string &  GetNamespaceName (void) const   Get namespace name. More...
  bool  HasNamespacePrefix (void) const   Check if data type has namespace prefix. More...
  const string &  GetNamespacePrefix (void) const   Get namespace prefix. More...
    CObject (void)   Constructor. More...
    CObject (const CObject &src)   Copy constructor. More...
  virtual  ~CObject (void)   Destructor. More...
  CObject &  operator= (const CObject &src) THROWS_NONE   Assignment operator. More...
  bool  CanBeDeleted (void) const THROWS_NONE   Check if object can be deleted. More...
  bool  IsAllocatedInPool (void) const THROWS_NONE   Check if object is allocated in memory pool (not system heap) More...
  bool  Referenced (void) const THROWS_NONE   Check if object is referenced. More...
  bool  ReferencedOnlyOnce (void) const THROWS_NONE   Check if object is referenced only once. More...
  void  AddReference (void) const   Add reference to object. More...
  void  RemoveReference (void) const   Remove reference to object. More...
  void  ReleaseReference (void) const   Remove reference without deleting object. More...
  virtual void  DoNotDeleteThisObject (void)   Mark this object as not allocated in heap – do not delete this object. More...
  virtual void  DoDeleteThisObject (void)   Mark this object as allocated in heap – object can be deleted. More...
  void *  operator new (size_t size)   Define new operator for memory allocation. More...
  void *  operator new[] (size_t size)   Define new[] operator for 'array' memory allocation. More...
  void  operator delete (void *ptr)   Define delete operator for memory deallocation. More...
  void  operator delete[] (void *ptr)   Define delete[] operator for memory deallocation. More...
  void *  operator new (size_t size, void *place)   Define new operator. More...
  void  operator delete (void *ptr, void *place)   Define delete operator. More...
  void *  operator new (size_t size, CObjectMemoryPool *place)   Define new operator using memory pool. More...
  void  operator delete (void *ptr, CObjectMemoryPool *place)   Define delete operator. More...
    CDebugDumpable (void)   virtual  ~CDebugDumpable (void)   void  DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const   void  DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const   void  DumpToConsole (void) const  

CStatistics_Base –.

Definition at line 68 of file Statistics_.hpp.

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