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NCBI C++ ToolKit: CSplitQueryBlk Class Reference
CSplitQueryBlk (Uint4 num_chunks, bool gapped_merge=true) Constructor for wrapper class for SSplitQueryBlk. More...
~CSplitQueryBlk () Destructor. More...
size_t GetNumChunks () const Retrieve the number of chunks. More...
size_t GetNumQueriesForChunk (size_t chunk_num) const Get the number of queries in a given chunk. More...
vector< size_t > GetQueryIndices (size_t chunk_num) const Get the indices of the queries contained in a given chunk. More...
vector< int > GetQueryContexts (size_t chunk_num) const Get the contexts of the queries contained in a given chunk. More...
vector< size_t > GetContextOffsets (size_t chunk_num) const Get the context offsets (corrections) of the queries contained in a given chunk. More...
TChunkRange GetChunkBounds (size_t chunk_num) const Get the boundaries of a chunk in the concatenated query. More...
void SetChunkBounds (size_t chunk_num, const TChunkRange &chunk_range) Set the boundaries of a chunk in the concatenated query. More...
void AddQueryToChunk (size_t chunk_num, Int4 query_index) Adds a query index to a given chunk. More...
void AddContextToChunk (size_t chunk_num, Int4 context_index) Adds a query context to a given chunk. More...
void AddContextOffsetToChunk (size_t chunk_num, Int4 context_offset) Adds a context offset (correction) to a given chunk. More...
SSplitQueryBlk * GetCStruct () const Returns the C structure managed by objects of this class. More...
void SetChunkOverlapSize (size_t size) Sets the size (# of bases/residues) of overlap between query chunks. More...
size_t GetChunkOverlapSize () const Gets the size (# of bases/residues) of overlap between query chunks. More...
CObject (void) Constructor. More...
CObject (const CObject &src) Copy constructor. More...
virtual ~CObject (void) Destructor. More...
CObject & operator= (const CObject &src) THROWS_NONE Assignment operator. More...
bool CanBeDeleted (void) const THROWS_NONE Check if object can be deleted. More...
bool IsAllocatedInPool (void) const THROWS_NONE Check if object is allocated in memory pool (not system heap) More...
bool Referenced (void) const THROWS_NONE Check if object is referenced. More...
bool ReferencedOnlyOnce (void) const THROWS_NONE Check if object is referenced only once. More...
void AddReference (void) const Add reference to object. More...
void RemoveReference (void) const Remove reference to object. More...
void ReleaseReference (void) const Remove reference without deleting object. More...
virtual void DoNotDeleteThisObject (void) Mark this object as not allocated in heap – do not delete this object. More...
virtual void DoDeleteThisObject (void) Mark this object as allocated in heap – object can be deleted. More...
void * operator new (size_t size) Define new operator for memory allocation. More...
void * operator new[] (size_t size) Define new[] operator for 'array' memory allocation. More...
void operator delete (void *ptr) Define delete operator for memory deallocation. More...
void operator delete[] (void *ptr) Define delete[] operator for memory deallocation. More...
void * operator new (size_t size, void *place) Define new operator. More...
void operator delete (void *ptr, void *place) Define delete operator. More...
void * operator new (size_t size, CObjectMemoryPool *place) Define new operator using memory pool. More...
void operator delete (void *ptr, CObjectMemoryPool *place) Define delete operator. More...
virtual void DebugDump (CDebugDumpContext ddc, unsigned int depth) const Define method for dumping debug information. More...
CDebugDumpable (void) virtual ~CDebugDumpable (void) void DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const void DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const void DumpToConsole (void) const
Wrapper class around SSplitQueryBlk structure.
Definition at line 53 of file split_query_blk.hpp.
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