Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/classCSpliced__seg__Base.html below:
NCBI C++ ToolKit: CSpliced_seg_Base Class Reference
CSpliced_seg_Base (void) virtual ~CSpliced_seg_Base (void) DECLARE_INTERNAL_TYPE_INFO () bool IsSetProduct_id (void) const product is either protein or transcript (cDNA) Check if a value has been assigned to Product_id data member. More...
bool CanGetProduct_id (void) const Check if it is safe to call GetProduct_id method. More...
void ResetProduct_id (void) Reset Product_id data member. More...
const TProduct_id & GetProduct_id (void) const Get the Product_id member data. More...
void SetProduct_id (TProduct_id &value) Assign a value to Product_id data member. More...
TProduct_id & SetProduct_id (void) Assign a value to Product_id data member. More...
bool IsSetGenomic_id (void) const Check if a value has been assigned to Genomic_id data member. More...
bool CanGetGenomic_id (void) const Check if it is safe to call GetGenomic_id method. More...
void ResetGenomic_id (void) Reset Genomic_id data member. More...
const TGenomic_id & GetGenomic_id (void) const Get the Genomic_id member data. More...
void SetGenomic_id (TGenomic_id &value) Assign a value to Genomic_id data member. More...
TGenomic_id & SetGenomic_id (void) Assign a value to Genomic_id data member. More...
bool IsSetProduct_strand (void) const should be 'plus' or 'minus' Check if a value has been assigned to Product_strand data member. More...
bool CanGetProduct_strand (void) const Check if it is safe to call GetProduct_strand method. More...
void ResetProduct_strand (void) Reset Product_strand data member. More...
TProduct_strand GetProduct_strand (void) const Get the Product_strand member data. More...
void SetProduct_strand (TProduct_strand value) Assign a value to Product_strand data member. More...
TProduct_strand & SetProduct_strand (void) Assign a value to Product_strand data member. More...
bool IsSetGenomic_strand (void) const Check if a value has been assigned to Genomic_strand data member. More...
bool CanGetGenomic_strand (void) const Check if it is safe to call GetGenomic_strand method. More...
void ResetGenomic_strand (void) Reset Genomic_strand data member. More...
TGenomic_strand GetGenomic_strand (void) const Get the Genomic_strand member data. More...
void SetGenomic_strand (TGenomic_strand value) Assign a value to Genomic_strand data member. More...
TGenomic_strand & SetGenomic_strand (void) Assign a value to Genomic_strand data member. More...
bool IsSetProduct_type (void) const Check if a value has been assigned to Product_type data member. More...
bool CanGetProduct_type (void) const Check if it is safe to call GetProduct_type method. More...
void ResetProduct_type (void) Reset Product_type data member. More...
TProduct_type GetProduct_type (void) const Get the Product_type member data. More...
void SetProduct_type (TProduct_type value) Assign a value to Product_type data member. More...
TProduct_type & SetProduct_type (void) Assign a value to Product_type data member. More...
bool IsSetExons (void) const set of segments involved each segment corresponds to one exon exons are always in biological order Check if a value has been assigned to Exons data member. More...
bool CanGetExons (void) const Check if it is safe to call GetExons method. More...
void ResetExons (void) Reset Exons data member. More...
const TExons & GetExons (void) const Get the Exons member data. More...
TExons & SetExons (void) Assign a value to Exons data member. More...
bool IsSetPoly_a (void) const start of poly(A) tail on the transcript For sense transcripts: aligned product positions < poly-a <= product-length poly-a == product-length indicates inferred poly(A) tail at transcript's end For antisense transcripts: -1 <= poly-a < aligned product positions poly-a == -1 indicates inferred poly(A) tail at transcript's start Check if a value has been assigned to Poly_a data member. More...
bool CanGetPoly_a (void) const Check if it is safe to call GetPoly_a method. More...
void ResetPoly_a (void) Reset Poly_a data member. More...
TPoly_a GetPoly_a (void) const Get the Poly_a member data. More...
void SetPoly_a (TPoly_a value) Assign a value to Poly_a data member. More...
TPoly_a & SetPoly_a (void) Assign a value to Poly_a data member. More...
bool IsSetProduct_length (void) const length of the product, in bases/residues from this (or from poly-a if present), a 3' unaligned length can be extracted Check if a value has been assigned to Product_length data member. More...
bool CanGetProduct_length (void) const Check if it is safe to call GetProduct_length method. More...
void ResetProduct_length (void) Reset Product_length data member. More...
TProduct_length GetProduct_length (void) const Get the Product_length member data. More...
void SetProduct_length (TProduct_length value) Assign a value to Product_length data member. More...
TProduct_length & SetProduct_length (void) Assign a value to Product_length data member. More...
bool IsSetModifiers (void) const alignment descriptors / modifiers this provides us a set for extension Check if a value has been assigned to Modifiers data member. More...
bool CanGetModifiers (void) const Check if it is safe to call GetModifiers method. More...
void ResetModifiers (void) Reset Modifiers data member. More...
const TModifiers & GetModifiers (void) const Get the Modifiers member data. More...
TModifiers & SetModifiers (void) Assign a value to Modifiers data member. More...
virtual void Reset (void) Reset the whole object. More...
CSerialObject (void) virtual ~CSerialObject (void) virtual const CTypeInfo * GetThisTypeInfo (void) const =0 virtual void Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive) Set object to copy of another one. More...
virtual bool Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const Check if both objects contain the same values. More...
virtual void DebugDump (CDebugDumpContext ddc, unsigned int depth) const Define method for dumping debug information. More...
void ThrowUnassigned (TMemberIndex index) const void ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const bool HasNamespaceName (void) const Check if object data type has namespace name. More...
const string & GetNamespaceName (void) const Get namespace name. More...
bool HasNamespacePrefix (void) const Check if data type has namespace prefix. More...
const string & GetNamespacePrefix (void) const Get namespace prefix. More...
CObject (void) Constructor. More...
CObject (const CObject &src) Copy constructor. More...
virtual ~CObject (void) Destructor. More...
CObject & operator= (const CObject &src) THROWS_NONE Assignment operator. More...
bool CanBeDeleted (void) const THROWS_NONE Check if object can be deleted. More...
bool IsAllocatedInPool (void) const THROWS_NONE Check if object is allocated in memory pool (not system heap) More...
bool Referenced (void) const THROWS_NONE Check if object is referenced. More...
bool ReferencedOnlyOnce (void) const THROWS_NONE Check if object is referenced only once. More...
void AddReference (void) const Add reference to object. More...
void RemoveReference (void) const Remove reference to object. More...
void ReleaseReference (void) const Remove reference without deleting object. More...
virtual void DoNotDeleteThisObject (void) Mark this object as not allocated in heap – do not delete this object. More...
virtual void DoDeleteThisObject (void) Mark this object as allocated in heap – object can be deleted. More...
void * operator new (size_t size) Define new operator for memory allocation. More...
void * operator new[] (size_t size) Define new[] operator for 'array' memory allocation. More...
void operator delete (void *ptr) Define delete operator for memory deallocation. More...
void operator delete[] (void *ptr) Define delete[] operator for memory deallocation. More...
void * operator new (size_t size, void *place) Define new operator. More...
void operator delete (void *ptr, void *place) Define delete operator. More...
void * operator new (size_t size, CObjectMemoryPool *place) Define new operator using memory pool. More...
void operator delete (void *ptr, CObjectMemoryPool *place) Define delete operator. More...
CDebugDumpable (void) virtual ~CDebugDumpable (void) void DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const void DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const void DumpToConsole (void) const
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