Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/classCSparse__seg__Base.html below:
NCBI C++ ToolKit: CSparse_seg_Base Class Reference
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CSparse_seg_Base (void) virtual ~CSparse_seg_Base (void) DECLARE_INTERNAL_TYPE_INFO () bool IsSetMaster_id (void) const Check if a value has been assigned to Master_id data member. More...
bool CanGetMaster_id (void) const Check if it is safe to call GetMaster_id method. More...
void ResetMaster_id (void) Reset Master_id data member. More...
const TMaster_id & GetMaster_id (void) const Get the Master_id member data. More...
void SetMaster_id (TMaster_id &value) Assign a value to Master_id data member. More...
TMaster_id & SetMaster_id (void) Assign a value to Master_id data member. More...
bool IsSetRows (void) const pairwise alignments constituting this multiple alignment Check if a value has been assigned to Rows data member. More...
bool CanGetRows (void) const Check if it is safe to call GetRows method. More...
void ResetRows (void) Reset Rows data member. More...
const TRows & GetRows (void) const Get the Rows member data. More...
TRows & SetRows (void) Assign a value to Rows data member. More...
bool IsSetRow_scores (void) const per-row scores Check if a value has been assigned to Row_scores data member. More...
bool CanGetRow_scores (void) const Check if it is safe to call GetRow_scores method. More...
void ResetRow_scores (void) Reset Row_scores data member. More...
const TRow_scores & GetRow_scores (void) const Get the Row_scores member data. More...
TRow_scores & SetRow_scores (void) Assign a value to Row_scores data member. More...
bool IsSetExt (void) const index of extra items Check if a value has been assigned to Ext data member. More...
bool CanGetExt (void) const Check if it is safe to call GetExt method. More...
void ResetExt (void) Reset Ext data member. More...
const TExt & GetExt (void) const Get the Ext member data. More...
TExt & SetExt (void) Assign a value to Ext data member. More...
virtual void Reset (void) Reset the whole object. More...
CSerialObject (void) virtual ~CSerialObject (void) virtual const CTypeInfo * GetThisTypeInfo (void) const =0 virtual void Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive) Set object to copy of another one. More...
virtual bool Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const Check if both objects contain the same values. More...
virtual void DebugDump (CDebugDumpContext ddc, unsigned int depth) const Define method for dumping debug information. More...
void ThrowUnassigned (TMemberIndex index) const void ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const bool HasNamespaceName (void) const Check if object data type has namespace name. More...
const string & GetNamespaceName (void) const Get namespace name. More...
bool HasNamespacePrefix (void) const Check if data type has namespace prefix. More...
const string & GetNamespacePrefix (void) const Get namespace prefix. More...
CObject (void) Constructor. More...
CObject (const CObject &src) Copy constructor. More...
virtual ~CObject (void) Destructor. More...
CObject & operator= (const CObject &src) THROWS_NONE Assignment operator. More...
bool CanBeDeleted (void) const THROWS_NONE Check if object can be deleted. More...
bool IsAllocatedInPool (void) const THROWS_NONE Check if object is allocated in memory pool (not system heap) More...
bool Referenced (void) const THROWS_NONE Check if object is referenced. More...
bool ReferencedOnlyOnce (void) const THROWS_NONE Check if object is referenced only once. More...
void AddReference (void) const Add reference to object. More...
void RemoveReference (void) const Remove reference to object. More...
void ReleaseReference (void) const Remove reference without deleting object. More...
virtual void DoNotDeleteThisObject (void) Mark this object as not allocated in heap – do not delete this object. More...
virtual void DoDeleteThisObject (void) Mark this object as allocated in heap – object can be deleted. More...
void * operator new (size_t size) Define new operator for memory allocation. More...
void * operator new[] (size_t size) Define new[] operator for 'array' memory allocation. More...
void operator delete (void *ptr) Define delete operator for memory deallocation. More...
void operator delete[] (void *ptr) Define delete[] operator for memory deallocation. More...
void * operator new (size_t size, void *place) Define new operator. More...
void operator delete (void *ptr, void *place) Define delete operator. More...
void * operator new (size_t size, CObjectMemoryPool *place) Define new operator using memory pool. More...
void operator delete (void *ptr, CObjectMemoryPool *place) Define delete operator. More...
CDebugDumpable (void) virtual ~CDebugDumpable (void) void DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const void DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const void DumpToConsole (void) const
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Sparse-seg follows the semantics of dense-seg and is more optimal for representing sparse multiple alignments
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CSparse_seg_Base –
Definition at line 85 of file Sparse_seg_.hpp.
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