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NCBI C++ ToolKit: CSimpleScoringMethod Class Reference
Search Toolkit Book for CSimpleScoringMethod
CSimpleScoringMethod - trivial implementation of IScoringMethod. More...
#include <gui/widgets/aln_score/simple_methods.hpp>
CSimpleScoringMethod () CSimpleScoringMethod. More...
CSimpleScoringMethod (int colors) CSimpleScoringMethod (const CSimpleScoringMethod &orig) virtual ~CSimpleScoringMethod () void SetOptions (int options) int GetOptions () void CreateColorTable (int size) virtual IUITool * Clone () const virtual string GetName () const returns unique name of the method that is used in UI to identify it More...
virtual string GetDescription () const returns a detailed description of the method that is used in UI More...
virtual int GetType () const returns combination of EAlignType flags defining types of alignments that can be colored with this method More...
virtual bool IsAverageable () const return "true" if scores could be averaged More...
virtual int GetSupportedColorTypes () const returns a combination of EColorType flags More...
virtual const CRgbaColor & GetColorForScore (TScore score, EColorType type) const returns a color corresponding to a given score value. More...
virtual const CRgbaColor & GetColorForNoScore (EColorType type) const Call for display colors when CanCalculateScores returns false. More...
virtual void SetColorForNoScore (EColorType type, const CRgbaColor &color) virtual void CalculateScores (char cons, const string &column, TScore &col_score, TScoreVector &scores) virtual bool CanCalculateScores (const IScoringAlignment &aln) Do we have what it takes to calculate scores? e.g. a master row selected? More...
virtual const CMenuItem * GetMenu () Returns a pointer to the submenu. More...
virtual bool HasPropertiesPanel () const returns true if the method supports properties dialog More...
virtual wxWindow * CreatePropertiesPanel (wxWindow *parent) This a factory method that shall produce a CPropertiesPanel representing properties of the method; the panel Apply() must take care of appying changes to the method. More...
CObject (void) Constructor. More...
CObject (const CObject &src) Copy constructor. More...
virtual ~CObject (void) Destructor. More...
CObject & operator= (const CObject &src) THROWS_NONE Assignment operator. More...
bool CanBeDeleted (void) const THROWS_NONE Check if object can be deleted. More...
bool IsAllocatedInPool (void) const THROWS_NONE Check if object is allocated in memory pool (not system heap) More...
bool Referenced (void) const THROWS_NONE Check if object is referenced. More...
bool ReferencedOnlyOnce (void) const THROWS_NONE Check if object is referenced only once. More...
void AddReference (void) const Add reference to object. More...
void RemoveReference (void) const Remove reference to object. More...
void ReleaseReference (void) const Remove reference without deleting object. More...
virtual void DoNotDeleteThisObject (void) Mark this object as not allocated in heap – do not delete this object. More...
virtual void DoDeleteThisObject (void) Mark this object as allocated in heap – object can be deleted. More...
void * operator new (size_t size) Define new operator for memory allocation. More...
void * operator new[] (size_t size) Define new[] operator for 'array' memory allocation. More...
void operator delete (void *ptr) Define delete operator for memory deallocation. More...
void operator delete[] (void *ptr) Define delete[] operator for memory deallocation. More...
void * operator new (size_t size, void *place) Define new operator. More...
void operator delete (void *ptr, void *place) Define delete operator. More...
void * operator new (size_t size, CObjectMemoryPool *place) Define new operator using memory pool. More...
void operator delete (void *ptr, CObjectMemoryPool *place) Define delete operator. More...
virtual void DebugDump (CDebugDumpContext ddc, unsigned int depth) const Define method for dumping debug information. More...
CDebugDumpable (void) virtual ~CDebugDumpable (void) void DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const void DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const void DumpToConsole (void) const virtual ~IScoringMethod () virtual ~IUITool () Public Member Functions inherited from IColumnScoringMethod virtual ~IColumnScoringMethod () virtual bool NeedsTranslation () const virtual void UpdateSettings (const IScoringAlignment &aln) Set alignment specifi settings. More...
virtual ~IUIToolWithGUI () virtual ~IUIToolWithGUI ()
CSimpleScoringMethod - trivial implementation of IScoringMethod.
Scores are calculated as frequencies of symbols normalized to fit in range [0, 1]. CreateColorTable() must be called once before any GetColorForScore() calls.
Definition at line 51 of file simple_methods.hpp.
◆ EOptions ◆ CSimpleScoringMethod() [1/3] CSimpleScoringMethod::CSimpleScoringMethod ( ) ◆ CSimpleScoringMethod() [2/3] CSimpleScoringMethod::CSimpleScoringMethod ( int colors ) ◆ CSimpleScoringMethod() [3/3] ◆ ~CSimpleScoringMethod() CSimpleScoringMethod::~CSimpleScoringMethod ( ) virtual
Definition at line 142 of file simple_methods.cpp.
◆ CalculateScores() ◆ CanCalculateScores() ◆ Clone() IUITool * CSimpleScoringMethod::Clone ( void ) const virtual ◆ CreateColorTable() void CSimpleScoringMethod::CreateColorTable ( int size ) ◆ CreatePropertiesPanel() wxWindow * CSimpleScoringMethod::CreatePropertiesPanel ( wxWindow * parent ) virtual ◆ GetColorForNoScore() ◆ GetColorForScore() ◆ GetDescription() string CSimpleScoringMethod::GetDescription ( ) const virtual ◆ GetMenu()
Returns a pointer to the submenu.
If the pointer is not NULL, then this submenu is integrated into the application's menu. If method is derived from CCommandTarget it will recieve command events.
Implements IUIToolWithGUI.
Reimplemented in CSNPScoringMethod.
Definition at line 321 of file simple_methods.cpp.
References m_Menu.
◆ GetName() string CSimpleScoringMethod::GetName ( ) const virtual ◆ GetOptions() int CSimpleScoringMethod::GetOptions ( void ) ◆ GetSupportedColorTypes() int CSimpleScoringMethod::GetSupportedColorTypes ( ) const virtual ◆ GetType() int CSimpleScoringMethod::GetType ( ) const virtual ◆ HasPropertiesPanel() bool CSimpleScoringMethod::HasPropertiesPanel ( ) const virtual ◆ IsAverageable() bool CSimpleScoringMethod::IsAverageable ( ) const virtual ◆ SetColorForNoScore() ◆ SetOptions() void CSimpleScoringMethod::SetOptions ( int options ) ◆ x_Init() void CSimpleScoringMethod::x_Init ( int colors ) private ◆ CSimpleScoringPanel ◆ m_Best ◆ m_ColorTable ◆ m_Gap char CSimpleScoringMethod::m_Gap protected ◆ m_Menu unique_ptr<CMenuItem> CSimpleScoringMethod::m_Menu protected ◆ m_Options int CSimpleScoringMethod::m_Options protected ◆ m_Space char CSimpleScoringMethod::m_Space protected ◆ m_vCharCounts vector<int> CSimpleScoringMethod::m_vCharCounts protected ◆ m_Worst
The documentation for this class was generated from the following files:
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