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NCBI C++ ToolKit: CSeqVectorProcess Class Reference

Search Toolkit Book for CSeqVectorProcess

#include "process_seqvector.hpp"
(Private to src/app/streamtest.)

Definition at line 37 of file process_seqvector.hpp.

◆ EGapType Enumerator eGT_one_dash 

A single dash, followed by a line break.

eGT_dashes 

Multiple inline dashes.

eGT_letters 

Multiple inline Ns or Xs as appropriate (default).

eGT_count 

>?N or >?unk100, as appropriate.

Definition at line 85 of file process_seqvector.hpp.

◆ CSeqVectorProcess() ◆ ~CSeqVectorProcess() ◆ ProcessFinalize() void CSeqVectorProcess::ProcessFinalize ( ) inlinevirtual ◆ ProcessInitialize() void CSeqVectorProcess::ProcessInitialize ( const CArgs &  args ) inlinevirtual ◆ SeqEntryInitialize() virtual void CSeqVectorProcess::SeqEntryInitialize ( CRef< CSeq_entry > &  se ) inlinevirtual ◆ SeqEntryProcess() void CSeqVectorProcess::SeqEntryProcess ( ) inlinevirtual

Implements CSeqEntryProcess.

Definition at line 143 of file process_seqvector.hpp.

References CBioseq_Handle::eCoding_Iupac, eGT_count, eGT_dashes, eGT_letters, eGT_one_dash, ERR_POST, Error(), gen, CScope::GetBioseqHandle(), CBioseq_Handle::GetSeqVector(), CSeqEntryProcess::m_entry, m_gap_mode, m_out, CScopedProcess::m_scope, CScopedProcess::m_topseh, VISIT_ALL_BIOSEQS_WITHIN_SEQENTRY, CException::what(), and x_FsaSeqIdWrite().

◆ x_FsaSeqIdWrite() void CSeqVectorProcess::x_FsaSeqIdWrite ( const CBioseq &  bioseq ) inline ◆ m_debug bool CSeqVectorProcess::m_debug protected ◆ m_gap_mode string CSeqVectorProcess::m_gap_mode protected ◆ m_out ◆ m_timer

The documentation for this class was generated from the following file:

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