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NCBI C++ ToolKit: CScorePValuesCalc Class Reference

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Wrapper for P-values calculation. More...

#include <algo/blast/gumbel_params/pvalues.hpp>

Collaboration diagram for CScorePValuesCalc:

Detailed Description

Wrapper for P-values calculation.

Definition at line 192 of file pvalues.hpp.

Constructor & Destructor Documentation ◆ CScorePValuesCalc() [1/2] ◆ CScorePValuesCalc() [2/2] Member Function Documentation ◆ GetResult() ◆ operator=() ◆ Run()

Calculate P-values.

Definition at line 106 of file pvalues.cpp.

References _ASSERT, SGumbelParams::ai, SGumbelParams::ai_error, CGumbelParamsResult::SSbsArrays::ai_sbs, SGumbelParams::aj, SGumbelParams::aj_error, CGumbelParamsResult::SSbsArrays::aj_sbs, SGumbelParams::alpha_i, SGumbelParams::alpha_i_error, CGumbelParamsResult::SSbsArrays::alpha_i_sbs, SGumbelParams::alpha_j, SGumbelParams::alpha_j_error, CGumbelParamsResult::SSbsArrays::alpha_j_sbs, SGumbelParams::C, SGumbelParams::C_error, CGumbelParamsResult::SSbsArrays::C_sbs, SGumbelParams::G, SGumbelParams::gapless_a, SGumbelParams::gapless_a_error, SGumbelParams::gapless_alpha, SGumbelParams::gapless_alpha_error, CGumbelParamsResult::GetGumbelParams(), CScorePValuesOptions::GetGumbelParams(), CScorePValuesOptions::GetMaxScore(), CScorePValuesOptions::GetMinScore(), CGumbelParamsResult::GetSbsArrays(), CScorePValuesOptions::GetSeq1Len(), CScorePValuesOptions::GetSeq2Len(), i, SGumbelParams::K, SGumbelParams::K_error, CGumbelParamsResult::SSbsArrays::K_sbs, SGumbelParams::lambda, SGumbelParams::lambda_error, CGumbelParamsResult::SSbsArrays::lambda_sbs, m_Options, m_Result, NCBI_THROW, NULL, CRef< C, Locker >::Reset(), result, SGumbelParams::sigma, SGumbelParams::sigma_error, CGumbelParamsResult::SSbsArrays::sigma_sbs, and CScorePValuesOptions::Validate().

Referenced by BOOST_AUTO_TEST_CASE(), and CGumbelParamsApplication::Run().

Member Data Documentation ◆ m_Options ◆ m_Result

The documentation for this class was generated from the following files:

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