Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/classCSNPScoringMethod.html below:
NCBI C++ ToolKit: CSNPScoringMethod Class Reference
CSNPScoringMethod () CSNPScoringMethod. More...
CSNPScoringMethod (const CSNPScoringMethod &orig) virtual void CalculateScores (char cons, const string &column, TScore &col_score, TScoreVector &scores) virtual bool CanCalculateScores (const IScoringAlignment &aln) Do we have what it takes to calculate scores? e.g. a master row selected? More...
virtual const CRgbaColor & GetColorForNoScore (EColorType type) const Call for display colors when CanCalculateScores returns false. More...
virtual void SetColorForNoScore (EColorType type, const CRgbaColor &color) virtual IUITool * Clone () const virtual string GetName () const returns unique name of the method that is used in UI to identify it More...
virtual string GetDescription () const returns a detailed description of the method that is used in UI More...
virtual int GetSupportedColorTypes () const returns a combination of EColorType flags More...
virtual const CRgbaColor & GetColorForScore (TScore score, EColorType type) const returns a color corresponding to a given score value. More...
virtual const CMenuItem * GetMenu () Returns a pointer to the submenu. More...
virtual bool HasPropertiesPanel () const returns true if the method supports properties dialog More...
virtual wxWindow * CreatePropertiesPanel (wxWindow *parent) This a factory method that shall produce a CPropertiesPanel representing properties of the method; the panel Apply() must take care of appying changes to the method. More...
CSimpleScoringMethod () CSimpleScoringMethod. More...
CSimpleScoringMethod (int colors) CSimpleScoringMethod (const CSimpleScoringMethod &orig) virtual ~CSimpleScoringMethod () void SetOptions (int options) int GetOptions () void CreateColorTable (int size) virtual int GetType () const returns combination of EAlignType flags defining types of alignments that can be colored with this method More...
virtual bool IsAverageable () const return "true" if scores could be averaged More...
CObject (void) Constructor. More...
CObject (const CObject &src) Copy constructor. More...
virtual ~CObject (void) Destructor. More...
CObject & operator= (const CObject &src) THROWS_NONE Assignment operator. More...
bool CanBeDeleted (void) const THROWS_NONE Check if object can be deleted. More...
bool IsAllocatedInPool (void) const THROWS_NONE Check if object is allocated in memory pool (not system heap) More...
bool Referenced (void) const THROWS_NONE Check if object is referenced. More...
bool ReferencedOnlyOnce (void) const THROWS_NONE Check if object is referenced only once. More...
void AddReference (void) const Add reference to object. More...
void RemoveReference (void) const Remove reference to object. More...
void ReleaseReference (void) const Remove reference without deleting object. More...
virtual void DoNotDeleteThisObject (void) Mark this object as not allocated in heap – do not delete this object. More...
virtual void DoDeleteThisObject (void) Mark this object as allocated in heap – object can be deleted. More...
void * operator new (size_t size) Define new operator for memory allocation. More...
void * operator new[] (size_t size) Define new[] operator for 'array' memory allocation. More...
void operator delete (void *ptr) Define delete operator for memory deallocation. More...
void operator delete[] (void *ptr) Define delete[] operator for memory deallocation. More...
void * operator new (size_t size, void *place) Define new operator. More...
void operator delete (void *ptr, void *place) Define delete operator. More...
void * operator new (size_t size, CObjectMemoryPool *place) Define new operator using memory pool. More...
void operator delete (void *ptr, CObjectMemoryPool *place) Define delete operator. More...
virtual void DebugDump (CDebugDumpContext ddc, unsigned int depth) const Define method for dumping debug information. More...
CDebugDumpable (void) virtual ~CDebugDumpable (void) void DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const void DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const void DumpToConsole (void) const virtual ~IScoringMethod () virtual ~IUITool () Public Member Functions inherited from IColumnScoringMethod virtual ~IColumnScoringMethod () virtual bool NeedsTranslation () const virtual void UpdateSettings (const IScoringAlignment &aln) Set alignment specifi settings. More...
virtual ~IUIToolWithGUI () virtual ~IUIToolWithGUI ()
RetroSearch is an open source project built by @garambo
| Open a GitHub Issue
Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo
HTML:
3.2
| Encoding:
UTF-8
| Version:
0.7.4