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NCBI C++ ToolKit: CRegion_coordinates_Base Class Reference
Coordinate sites describe a region in space by reference to individual coordinates, in a particular model. More...
CRegion_coordinates_Base (void) virtual ~CRegion_coordinates_Base (void) DECLARE_INTERNAL_TYPE_INFO () bool IsSetModel_coord_set_id (void) const Check if a value has been assigned to Model_coord_set_id data member. More...
bool CanGetModel_coord_set_id (void) const Check if it is safe to call GetModel_coord_set_id method. More...
void ResetModel_coord_set_id (void) Reset Model_coord_set_id data member. More...
const TModel_coord_set_id & GetModel_coord_set_id (void) const Get the Model_coord_set_id member data. More...
void SetModel_coord_set_id (const TModel_coord_set_id &value) Assign a value to Model_coord_set_id data member. More...
TModel_coord_set_id & SetModel_coord_set_id (void) Assign a value to Model_coord_set_id data member. More...
bool IsSetNumber_of_coords (void) const Check if a value has been assigned to Number_of_coords data member. More...
bool CanGetNumber_of_coords (void) const Check if it is safe to call GetNumber_of_coords method. More...
void ResetNumber_of_coords (void) Reset Number_of_coords data member. More...
TNumber_of_coords GetNumber_of_coords (void) const Get the Number_of_coords member data. More...
void SetNumber_of_coords (TNumber_of_coords value) Assign a value to Number_of_coords data member. More...
TNumber_of_coords & SetNumber_of_coords (void) Assign a value to Number_of_coords data member. More...
bool IsSetCoordinate_indices (void) const Check if a value has been assigned to Coordinate_indices data member. More...
bool CanGetCoordinate_indices (void) const Check if it is safe to call GetCoordinate_indices method. More...
void ResetCoordinate_indices (void) Reset Coordinate_indices data member. More...
const TCoordinate_indices & GetCoordinate_indices (void) const Get the Coordinate_indices member data. More...
TCoordinate_indices & SetCoordinate_indices (void) Assign a value to Coordinate_indices data member. More...
virtual void Reset (void) Reset the whole object. More...
CSerialObject (void) virtual ~CSerialObject (void) virtual const CTypeInfo * GetThisTypeInfo (void) const =0 virtual void Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive) Set object to copy of another one. More...
virtual bool Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const Check if both objects contain the same values. More...
virtual void DebugDump (CDebugDumpContext ddc, unsigned int depth) const Define method for dumping debug information. More...
void ThrowUnassigned (TMemberIndex index) const void ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const bool HasNamespaceName (void) const Check if object data type has namespace name. More...
const string & GetNamespaceName (void) const Get namespace name. More...
bool HasNamespacePrefix (void) const Check if data type has namespace prefix. More...
const string & GetNamespacePrefix (void) const Get namespace prefix. More...
CObject (void) Constructor. More...
CObject (const CObject &src) Copy constructor. More...
virtual ~CObject (void) Destructor. More...
CObject & operator= (const CObject &src) THROWS_NONE Assignment operator. More...
bool CanBeDeleted (void) const THROWS_NONE Check if object can be deleted. More...
bool IsAllocatedInPool (void) const THROWS_NONE Check if object is allocated in memory pool (not system heap) More...
bool Referenced (void) const THROWS_NONE Check if object is referenced. More...
bool ReferencedOnlyOnce (void) const THROWS_NONE Check if object is referenced only once. More...
void AddReference (void) const Add reference to object. More...
void RemoveReference (void) const Remove reference to object. More...
void ReleaseReference (void) const Remove reference without deleting object. More...
virtual void DoNotDeleteThisObject (void) Mark this object as not allocated in heap – do not delete this object. More...
virtual void DoDeleteThisObject (void) Mark this object as allocated in heap – object can be deleted. More...
void * operator new (size_t size) Define new operator for memory allocation. More...
void * operator new[] (size_t size) Define new[] operator for 'array' memory allocation. More...
void operator delete (void *ptr) Define delete operator for memory deallocation. More...
void operator delete[] (void *ptr) Define delete[] operator for memory deallocation. More...
void * operator new (size_t size, void *place) Define new operator. More...
void operator delete (void *ptr, void *place) Define delete operator. More...
void * operator new (size_t size, CObjectMemoryPool *place) Define new operator using memory pool. More...
void operator delete (void *ptr, CObjectMemoryPool *place) Define delete operator. More...
CDebugDumpable (void) virtual ~CDebugDumpable (void) void DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const void DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const void DumpToConsole (void) const
Coordinate sites describe a region in space by reference to individual coordinates, in a particular model.
These coordinates may be either the x, y and z values of atomic coordinates, the triangles of a surface mesh, or the grid points of a density model. All are addressed in the same manner, as coordinate indices which give offsets from the beginning of the coordinate data arrays. A coordinate-index of 5, for example, refers to the 5th x, y and z values of an atomic coordinate set, the 5th v1, v2, and v3 values of a triangle mesh, or the 5th value in a density grid. PDB SITE and FTNOTE records refer to particular atomic coordinates, and they are represented as a region motif with addresses of type Region-coordinates. Any names or descriptions provided by PDB are thus associated with the indicated sites, in the indicated model.
CRegion_coordinates_Base –
Definition at line 85 of file Region_coordinates_.hpp.
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