Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/classCPssmWithParameters__Base.html below:
NCBI C++ ToolKit: CPssmWithParameters_Base Class Reference
CPssmWithParameters_Base (void) virtual ~CPssmWithParameters_Base (void) DECLARE_INTERNAL_TYPE_INFO () bool IsSetPssm (void) const This field is applicable to PSI-BLAST and formatrpsdb. More...
bool CanGetPssm (void) const Check if it is safe to call GetPssm method. More...
void ResetPssm (void) Reset Pssm data member. More...
const TPssm & GetPssm (void) const Get the Pssm member data. More...
void SetPssm (TPssm &value) Assign a value to Pssm data member. More...
TPssm & SetPssm (void) Assign a value to Pssm data member. More...
bool IsSetParams (void) const This field's rpsdbparams is used to specify the values of options for processing by formatrpsdb. More...
bool CanGetParams (void) const Check if it is safe to call GetParams method. More...
void ResetParams (void) Reset Params data member. More...
const TParams & GetParams (void) const Get the Params member data. More...
void SetParams (TParams &value) Assign a value to Params data member. More...
TParams & SetParams (void) Assign a value to Params data member. More...
virtual void Reset (void) Reset the whole object. More...
CSerialObject (void) virtual ~CSerialObject (void) virtual const CTypeInfo * GetThisTypeInfo (void) const =0 virtual void Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive) Set object to copy of another one. More...
virtual bool Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const Check if both objects contain the same values. More...
virtual void DebugDump (CDebugDumpContext ddc, unsigned int depth) const Define method for dumping debug information. More...
void ThrowUnassigned (TMemberIndex index) const void ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const bool HasNamespaceName (void) const Check if object data type has namespace name. More...
const string & GetNamespaceName (void) const Get namespace name. More...
bool HasNamespacePrefix (void) const Check if data type has namespace prefix. More...
const string & GetNamespacePrefix (void) const Get namespace prefix. More...
CObject (void) Constructor. More...
CObject (const CObject &src) Copy constructor. More...
virtual ~CObject (void) Destructor. More...
CObject & operator= (const CObject &src) THROWS_NONE Assignment operator. More...
bool CanBeDeleted (void) const THROWS_NONE Check if object can be deleted. More...
bool IsAllocatedInPool (void) const THROWS_NONE Check if object is allocated in memory pool (not system heap) More...
bool Referenced (void) const THROWS_NONE Check if object is referenced. More...
bool ReferencedOnlyOnce (void) const THROWS_NONE Check if object is referenced only once. More...
void AddReference (void) const Add reference to object. More...
void RemoveReference (void) const Remove reference to object. More...
void ReleaseReference (void) const Remove reference without deleting object. More...
virtual void DoNotDeleteThisObject (void) Mark this object as not allocated in heap – do not delete this object. More...
virtual void DoDeleteThisObject (void) Mark this object as allocated in heap – object can be deleted. More...
void * operator new (size_t size) Define new operator for memory allocation. More...
void * operator new[] (size_t size) Define new[] operator for 'array' memory allocation. More...
void operator delete (void *ptr) Define delete operator for memory deallocation. More...
void operator delete[] (void *ptr) Define delete[] operator for memory deallocation. More...
void * operator new (size_t size, void *place) Define new operator. More...
void operator delete (void *ptr, void *place) Define delete operator. More...
void * operator new (size_t size, CObjectMemoryPool *place) Define new operator using memory pool. More...
void operator delete (void *ptr, CObjectMemoryPool *place) Define delete operator. More...
CDebugDumpable (void) virtual ~CDebugDumpable (void) void DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const void DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const void DumpToConsole (void) const
Envelope containing PSSM and the parameters used to create it.
Provided for use in PSI-BLAST, formatrpsdb, and for the structure group.
CPssmWithParameters_Base –
Definition at line 75 of file PssmWithParameters_.hpp.
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