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NCBI C++ ToolKit: CPSGL_Blob_Processor Class Reference

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#include <objtools/data_loaders/genbank/impl/psg_blob_processor.hpp>

CPSGL_Blob_Processor (CDataSource *data_source, CPSGCaches *caches=nullptr, bool add_wgs_master=false) ~CPSGL_Blob_Processor () override EProcessResult ProcessItemFast (EPSG_Status status, const shared_ptr< CPSG_ReplyItem > &item) override EProcessResult ProcessItemSlow (EPSG_Status status, const shared_ptr< CPSG_ReplyItem > &item) override void SetLockedDelayedChunkInfo (const string &psg_blob_id, CTSE_Chunk_Info &locked_chunk_info) void SetLockedChunkInfo (CTSE_Chunk_Info &locked_chunk_info) pair< CTSE_Chunk_Info *, CRef< CID2S_Chunk > > GetNextLoadedChunk () bool GotForbidden () const bool GotUnauthorized () const int GetBlobInfoState (const string &psg_blob_id) CPSGL_Processor () virtual ~CPSGL_Processor () virtual const char * GetProcessorName () const virtual ostream & PrintProcessorDescr (ostream &out) const virtual ostream & PrintProcessorArgs (ostream &out) const SProcessorDescrPrinter Descr () const virtual EProcessResult ProcessReplyFast (EPSG_Status status, const shared_ptr< CPSG_Reply > &reply) virtual EProcessResult ProcessReplySlow (EPSG_Status status, const shared_ptr< CPSG_Reply > &reply) virtual EProcessResult ProcessReplyFinal () const vector< string > & GetErrors () const void AddError (const string &message) CObject (void) Constructor. More...
CObject (const CObject &src) Copy constructor. More...
virtual ~CObject (void) Destructor. More...
CObject & operator= (const CObject &src) THROWS_NONE Assignment operator. More...
bool CanBeDeleted (void) const THROWS_NONE Check if object can be deleted. More...
bool IsAllocatedInPool (void) const THROWS_NONE Check if object is allocated in memory pool (not system heap) More...
bool Referenced (void) const THROWS_NONE Check if object is referenced. More...
bool ReferencedOnlyOnce (void) const THROWS_NONE Check if object is referenced only once. More...
void AddReference (void) const Add reference to object. More...
void RemoveReference (void) const Remove reference to object. More...
void ReleaseReference (void) const Remove reference without deleting object. More...
virtual void DoNotDeleteThisObject (void) Mark this object as not allocated in heap – do not delete this object. More...
virtual void DoDeleteThisObject (void) Mark this object as allocated in heap – object can be deleted. More...
void * operator new (size_t size) Define new operator for memory allocation. More...
void * operator new[] (size_t size) Define new[] operator for 'array' memory allocation. More...
void operator delete (void *ptr) Define delete operator for memory deallocation. More...
void operator delete[] (void *ptr) Define delete[] operator for memory deallocation. More...
void * operator new (size_t size, void *place) Define new operator. More...
void operator delete (void *ptr, void *place) Define delete operator. More...
void * operator new (size_t size, CObjectMemoryPool *place) Define new operator using memory pool. More...
void operator delete (void *ptr, CObjectMemoryPool *place) Define delete operator. More...
virtual void DebugDump (CDebugDumpContext ddc, unsigned int depth) const Define method for dumping debug information. More...
CDebugDumpable (void) virtual ~CDebugDumpable (void) void DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const void DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const void DumpToConsole (void) const EProcessResult ProcessTSE_Lock (const string &blob_id, CTSE_Lock &tse_lock, EWaitForLock wait_for_lock=eNoWaitForLock) STSESlot * GetTSESlot (const string &blob_id) STSESlot * SetTSESlot (const string &blob_id) STSESlot * GetTSESlot (const CPSG_BlobId &blob_id) STSESlot * SetTSESlot (const CPSG_BlobId &blob_id) SSplitSlot * GetSplitSlot (const string &id2_info) SSplitSlot * SetSplitSlot (const string &id2_info) SBlobSlot * GetChunkSlot (const string &id2_info, TChunkId chunk_id) SBlobSlot * SetChunkSlot (const string &id2_info, TChunkId chunk_id) SBlobSlot * GetChunkSlot (const CPSG_ChunkId &chunk_id) SBlobSlot * SetChunkSlot (const CPSG_ChunkId &chunk_id) SBlobSlot * GetBlobSlot (const CPSG_BlobId *blob_id, const CPSG_ChunkId *chunk_id) SBlobSlot * SetBlobSlot (const CPSG_BlobId *blob_id, const CPSG_ChunkId *chunk_id) unique_ptr< CDeadline > GetWaitDeadline (const CPSG_SkippedBlob &skipped) const EProcessResult PreProcess (EPSG_Status status, const shared_ptr< CPSG_ReplyItem > &item) EProcessResult PostProcess (EPSG_Status status, const shared_ptr< CPSG_ReplyItem > &item) EProcessResult PostProcessBlob (const CPSG_DataId *id) EProcessResult PostProcessSkippedBlob (const CPSG_DataId *id) bool ParseTSE (const CPSG_BlobId *blob_id, SBlobSlot *data_slot) bool ParseSplitInfo (const CPSG_ChunkId *split_info_id, SBlobSlot *data_slot) bool ParseChunk (const CPSG_ChunkId *chunk_id, SBlobSlot *data_slot) EProcessResult TSE_ToOM (const CPSG_BlobId *blob_id, const CPSG_ChunkId *split_info_id, SBlobSlot *data_slot) EProcessResult Chunk_ToOM (const CPSG_ChunkId *chunk_id, SChunkSlot *chunk_slot) bool HasChunksToAssign (const CTSE_Lock &tse) EProcessResult AssignChunks (STSESlot *tse_slot) void SetDLBlobId (const string &psg_blob_id, const CConstRef< CPsgBlobId > &dl_blob_id) CConstRef< CPsgBlobId > GetDLBlobId (STSESlot *tse_slot) virtual CConstRef< CPsgBlobId > CreateDLBlobId (STSESlot *tse_slot) EProcessResult ObtainSkippedTSE_Lock (STSESlot *slot, EWaitForLock wait_for_lock=eNoWaitForLock) EProcessResult x_Failed (const string &message) virtual void DeleteThis (void) Virtual method "deleting" this object. More...

Definition at line 67 of file psg_blob_processor.hpp.

◆ TChunkId ◆ TSplitBlobMap ◆ TTSEBlobMap ◆ EWaitForLock ◆ CPSGL_Blob_Processor() ◆ ~CPSGL_Blob_Processor() ◆ AssignChunks()

Definition at line 909 of file psg_blob_processor.cpp.

References _ASSERT, CPSGL_Processor::eProcessed, AutoPtr< X, Del >::get(), CTSE_Split_Info::GetChunk(), CTSE_Chunk_Info::GetLoadInitGuard(), CTSE_Info::GetSplitInfo(), CTSE_Info::HasSplitInfo(), CSplitParser::Load(), m_BlobProcessorMutex, CPSGL_Blob_Processor::STSESlot::m_SplitSlot, CPSGL_Blob_Processor::STSESlot::m_TSE_Lock, and CTSE_Chunk_Info::SetLoaded().

Referenced by ProcessTSE_Lock(), and TSE_ToOM().

◆ Chunk_ToOM()

Definition at line 859 of file psg_blob_processor.cpp.

References _ASSERT, CPSGL_Processor::eProcessed, CTSE_Split_Info::GetChunk(), CPSG_ChunkId::GetId2Chunk(), CTSE_Chunk_Info::GetLoadInitGuard(), CTSE_Info::GetSplitInfo(), CTSE_Info::HasSplitInfo(), CTSE_Chunk_Info::IsLoaded(), kSplitInfoChunkId, CSplitParser::Load(), CPSGL_Blob_Processor::SBlobSlot::m_BlobObject, m_BlobProcessorMutex, CPSGL_Blob_Processor::SChunkSlot::m_LockedChunkInfo, CPSGL_Blob_Processor::SChunkSlot::m_SplitSlot, CTSE_Chunk_Info::SetLoaded(), and swap().

Referenced by PostProcessBlob().

◆ CreateDLBlobId() ◆ GetBlobInfoState() int CPSGL_Blob_Processor::GetBlobInfoState ( const string & psg_blob_id ) ◆ GetBlobSlot() ◆ GetChunkSlot() [1/2] ◆ GetChunkSlot() [2/2] ◆ GetDLBlobId() ◆ GetNextLoadedChunk() ◆ GetSkippedType() ◆ GetSplitSlot() ◆ GetTSESlot() [1/2] ◆ GetTSESlot() [2/2] ◆ GetWaitDeadline() ◆ GotForbidden() bool CPSGL_Blob_Processor::GotForbidden ( ) const inline ◆ GotUnauthorized() bool CPSGL_Blob_Processor::GotUnauthorized ( ) const inline ◆ HasChunksToAssign() ◆ ObtainSkippedTSE_Lock()

Definition at line 998 of file psg_blob_processor.cpp.

References _ASSERT, CPSGL_Processor::eFailed, CPSGL_Processor::eProcessed, CPSGL_Processor::eToNextStage, GetDLBlobId(), CDataSource::GetLoadedTSE_Lock(), CDataSource::GetTSE_LoadLockIfLoaded(), HasChunksToAssign(), Info(), CTSE_LoadLock::IsLoaded(), LOG_POST, m_DataSource, CPSGL_Blob_Processor::STSESlot::m_Skipped, CPSGL_Blob_Processor::STSESlot::m_SkippedWaitDeadline, CPSGL_Blob_Processor::STSESlot::m_TSE_Lock, and s_GetDebugLevel().

Referenced by PostProcessSkippedBlob(), ProcessItemFast(), and ProcessTSE_Lock().

◆ ParseChunk()

Definition at line 660 of file psg_blob_processor.cpp.

References _ASSERT, _TRACE, CPSGL_Processor::Descr(), GetBlobDataStream(), CPSG_ChunkId::GetId2Chunk(), CPSG_ChunkId::GetId2Info(), in(), kSplitInfoChunkId, LOG_POST, CPSGL_Blob_Processor::SBlobSlot::m_BlobData, CPSGL_Blob_Processor::SBlobSlot::m_BlobInfo, CPSGL_Blob_Processor::SBlobSlot::m_BlobObject, and m_BlobProcessorMutex.

Referenced by PostProcessBlob().

◆ ParseId() ◆ ParseSplitInfo()

Definition at line 625 of file psg_blob_processor.cpp.

Referenced by PostProcessBlob().

◆ ParseTSE()

Definition at line 590 of file psg_blob_processor.cpp.

References _ASSERT, _TRACE, CPSGL_Processor::Descr(), GetBlobDataStream(), CPSG_BlobId::GetId(), in(), LOG_POST, CPSGL_Blob_Processor::SBlobSlot::m_BlobData, CPSGL_Blob_Processor::SBlobSlot::m_BlobInfo, CPSGL_Blob_Processor::SBlobSlot::m_BlobObject, and m_BlobProcessorMutex.

Referenced by PostProcessBlob().

◆ PostProcess() ◆ PostProcessBlob()

Definition at line 551 of file psg_blob_processor.cpp.

References _ASSERT, _TRACE, Chunk_ToOM(), CPSGL_Processor::Descr(), GetBlobSlot(), CPSGL_Blob_Processor::SBlobSlot::IsReadyToDeserialize(), kSplitInfoChunkId, CPSGL_Blob_Processor::SBlobSlot::m_BlobObject, m_BlobProcessorMutex, ParseChunk(), ParseId(), ParseSplitInfo(), ParseTSE(), CPSG_DataId::Repr(), ToString(), TSE_ToOM(), and CPSGL_Processor::x_Failed().

Referenced by ProcessItemSlow().

◆ PostProcessSkippedBlob() ◆ PreProcess() ◆ ProcessItemFast()

Reimplemented from CPSGL_Processor.

Reimplemented in CPSGL_LocalCDDBlob_Processor, CPSGL_NA_Processor, and CPSGL_Get_Processor.

Definition at line 393 of file psg_blob_processor.cpp.

References _ASSERT, _TRACE, CPSGCache_Base< TK, TV >::Add(), data, CPSGL_Processor::Descr(), CPSG_ReplyItem::eBlobData, CPSG_ReplyItem::eBlobInfo, eForbidden, CPSGL_Processor::eProcessed, CPSG_ReplyItem::eProcessor, CPSG_ReplyItem::eSkippedBlob, eSuccess, CPSGL_Processor::eToNextStage, CPSG_Processor::eUnauthorized, GetDLBlobId(), GetWaitDeadline(), CPSGL_Blob_Processor::SBlobSlot::IsReadyToDeserialize(), kSplitInfoChunkId, CPSGL_Blob_Processor::SBlobSlot::m_BlobInfo, CPSGCaches::m_BlobInfoCache, CPSGL_Blob_Processor::SBlobSlot::m_BlobInfoStatus, m_BlobProcessorMutex, m_Caches, m_GotForbidden, m_GotUnauthorized, msg(), ObtainSkippedTSE_Lock(), ParseId(), SetBlobSlot(), SetChunkSlot(), SetSplitSlot(), and SetTSESlot().

Referenced by CPSGL_Get_Processor::ProcessItemFast(), CPSGL_NA_Processor::ProcessItemFast(), and CPSGL_LocalCDDBlob_Processor::ProcessItemFast().

◆ ProcessItemSlow() ◆ ProcessTSE_Lock()

Definition at line 1089 of file psg_blob_processor.cpp.

References _ASSERT, _TRACE, AssignChunks(), CPSGL_Processor::Descr(), CPSGL_Processor::eFailed, CPSGL_Processor::eProcessed, CPSGL_Processor::eToNextStage, CTSE_Lock::GetPointerOrNull(), GetTSESlot(), ObtainSkippedTSE_Lock(), r(), and CPSGL_Processor::x_Failed().

Referenced by CPSGL_LocalCDDBlob_Processor::ProcessItemFast(), CPSGL_NA_Processor::ProcessItemSlow(), CPSGL_Get_Processor::ProcessReplyFinal(), CPSGL_GetBlob_Processor::ProcessReplyFinal(), CPSGL_NA_Processor::ProcessReplyFinal(), CPSGL_Get_Processor::ProcessReplySlow(), CPSGL_GetBlob_Processor::ProcessReplySlow(), CPSGL_NA_Processor::ProcessReplySlow(), and CPSGL_LocalCDDBlob_Processor::ProcessReplySlow().

◆ SetBlobSlot() ◆ SetChunkSlot() [1/2] ◆ SetChunkSlot() [2/2] ◆ SetDLBlobId() ◆ SetLockedChunkInfo() void CPSGL_Blob_Processor::SetLockedChunkInfo ( CTSE_Chunk_Info & locked_chunk_info ) ◆ SetLockedDelayedChunkInfo() ◆ SetSplitSlot() ◆ SetTSESlot() [1/2] ◆ SetTSESlot() [2/2] ◆ TSE_ToOM()

Definition at line 696 of file psg_blob_processor.cpp.

Referenced by PostProcessBlob().

◆ kSplitInfoChunkId const TChunkId CPSGL_Blob_Processor::kSplitInfoChunkId = 999999999 static ◆ m_AddWGSMasterDescr bool CPSGL_Blob_Processor::m_AddWGSMasterDescr protected ◆ m_BlobProcessorMutex CFastMutex CPSGL_Blob_Processor::m_BlobProcessorMutex protected

Definition at line 173 of file psg_blob_processor.hpp.

Referenced by AssignChunks(), Chunk_ToOM(), ParseChunk(), ParseSplitInfo(), ParseTSE(), PostProcessBlob(), PostProcessSkippedBlob(), ProcessItemFast(), SetDLBlobId(), SetLockedChunkInfo(), SetLockedDelayedChunkInfo(), and TSE_ToOM().

◆ m_Caches ◆ m_DataSource ◆ m_GotForbidden bool CPSGL_Blob_Processor::m_GotForbidden = false protected ◆ m_GotUnauthorized bool CPSGL_Blob_Processor::m_GotUnauthorized = false protected ◆ m_SplitBlobMap ◆ m_TSEBlobMap

The documentation for this class was generated from the following files:

include/objtools/data_loaders/genbank/impl/psg_blob_processor.hpp
src/objtools/data_loaders/genbank/psg_blob_processor.cpp

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Home - News ( United States | United Kingdom | Italy | Germany ) - Football scores

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NCBI C++ ToolKit: CPSGL_Blob_Processor Class Reference

Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/classCPSGLBlobProcessor.html below: