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NCBI C++ ToolKit: CModel_space_points_Base Class Reference
The atoms whose location is described by each coordinate are identified via a hierarchical pointer to the chemical graph of the biomolecular assembly. More...
CModel_space_points_Base (void) virtual ~CModel_space_points_Base (void) DECLARE_INTERNAL_TYPE_INFO () bool IsSetScale_factor (void) const Check if a value has been assigned to Scale_factor data member. More...
bool CanGetScale_factor (void) const Check if it is safe to call GetScale_factor method. More...
void ResetScale_factor (void) Reset Scale_factor data member. More...
TScale_factor GetScale_factor (void) const Get the Scale_factor member data. More...
void SetScale_factor (TScale_factor value) Assign a value to Scale_factor data member. More...
TScale_factor & SetScale_factor (void) Assign a value to Scale_factor data member. More...
bool IsSetX (void) const Check if a value has been assigned to X data member. More...
bool CanGetX (void) const Check if it is safe to call GetX method. More...
void ResetX (void) Reset X data member. More...
const TX & GetX (void) const Get the X member data. More...
TX & SetX (void) Assign a value to X data member. More...
bool IsSetY (void) const Check if a value has been assigned to Y data member. More...
bool CanGetY (void) const Check if it is safe to call GetY method. More...
void ResetY (void) Reset Y data member. More...
const TY & GetY (void) const Get the Y member data. More...
TY & SetY (void) Assign a value to Y data member. More...
bool IsSetZ (void) const Check if a value has been assigned to Z data member. More...
bool CanGetZ (void) const Check if it is safe to call GetZ method. More...
void ResetZ (void) Reset Z data member. More...
const TZ & GetZ (void) const Get the Z member data. More...
TZ & SetZ (void) Assign a value to Z data member. More...
virtual void Reset (void) Reset the whole object. More...
CSerialObject (void) virtual ~CSerialObject (void) virtual const CTypeInfo * GetThisTypeInfo (void) const =0 virtual void Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive) Set object to copy of another one. More...
virtual bool Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const Check if both objects contain the same values. More...
virtual void DebugDump (CDebugDumpContext ddc, unsigned int depth) const Define method for dumping debug information. More...
void ThrowUnassigned (TMemberIndex index) const void ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const bool HasNamespaceName (void) const Check if object data type has namespace name. More...
const string & GetNamespaceName (void) const Get namespace name. More...
bool HasNamespacePrefix (void) const Check if data type has namespace prefix. More...
const string & GetNamespacePrefix (void) const Get namespace prefix. More...
CObject (void) Constructor. More...
CObject (const CObject &src) Copy constructor. More...
virtual ~CObject (void) Destructor. More...
CObject & operator= (const CObject &src) THROWS_NONE Assignment operator. More...
bool CanBeDeleted (void) const THROWS_NONE Check if object can be deleted. More...
bool IsAllocatedInPool (void) const THROWS_NONE Check if object is allocated in memory pool (not system heap) More...
bool Referenced (void) const THROWS_NONE Check if object is referenced. More...
bool ReferencedOnlyOnce (void) const THROWS_NONE Check if object is referenced only once. More...
void AddReference (void) const Add reference to object. More...
void RemoveReference (void) const Remove reference to object. More...
void ReleaseReference (void) const Remove reference without deleting object. More...
virtual void DoNotDeleteThisObject (void) Mark this object as not allocated in heap – do not delete this object. More...
virtual void DoDeleteThisObject (void) Mark this object as allocated in heap – object can be deleted. More...
void * operator new (size_t size) Define new operator for memory allocation. More...
void * operator new[] (size_t size) Define new[] operator for 'array' memory allocation. More...
void operator delete (void *ptr) Define delete operator for memory deallocation. More...
void operator delete[] (void *ptr) Define delete[] operator for memory deallocation. More...
void * operator new (size_t size, void *place) Define new operator. More...
void operator delete (void *ptr, void *place) Define delete operator. More...
void * operator new (size_t size, CObjectMemoryPool *place) Define new operator using memory pool. More...
void operator delete (void *ptr, CObjectMemoryPool *place) Define delete operator. More...
CDebugDumpable (void) virtual ~CDebugDumpable (void) void DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const void DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const void DumpToConsole (void) const
The atoms whose location is described by each coordinate are identified via a hierarchical pointer to the chemical graph of the biomolecular assembly.
Coordinates may be matched with atoms in the chemical structure by the values of the molecule, residue and atom id's given here, which match exactly the items of the same type defined in Biostruc-graph. Coordinates are given as integer values, with a scale factor to convert to real values for each x, y or z, in the units indicated in model-space. Integer values must be divided by the the scale factor. This use of integer values reduces the ASN.1 stream size. The scale factors for temperature factors and occupancies are given separately, but must be used in the same fashion to produce properly scaled real values.
CModel_space_points_Base –
Definition at line 83 of file Model_space_points_.hpp.
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