Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/classCModel__coordinate__set__Base.html below:
NCBI C++ ToolKit: CModel_coordinate_set_Base Class Reference
Atomic coordinates may be assigned literally or by reference to another biostruc. More...
CModel_coordinate_set_Base (void) virtual ~CModel_coordinate_set_Base (void) DECLARE_INTERNAL_TYPE_INFO () bool IsSetId (void) const Check if a value has been assigned to Id data member. More...
bool CanGetId (void) const Check if it is safe to call GetId method. More...
void ResetId (void) Reset Id data member. More...
const TId & GetId (void) const Get the Id member data. More...
void SetId (const TId &value) Assign a value to Id data member. More...
TId & SetId (void) Assign a value to Id data member. More...
bool IsSetDescr (void) const Check if a value has been assigned to Descr data member. More...
bool CanGetDescr (void) const Check if it is safe to call GetDescr method. More...
void ResetDescr (void) Reset Descr data member. More...
const TDescr & GetDescr (void) const Get the Descr member data. More...
TDescr & SetDescr (void) Assign a value to Descr data member. More...
bool IsSetCoordinates (void) const Check if a value has been assigned to Coordinates data member. More...
bool CanGetCoordinates (void) const Check if it is safe to call GetCoordinates method. More...
void ResetCoordinates (void) Reset Coordinates data member. More...
const TCoordinates & GetCoordinates (void) const Get the Coordinates member data. More...
void SetCoordinates (TCoordinates &value) Assign a value to Coordinates data member. More...
TCoordinates & SetCoordinates (void) Assign a value to Coordinates data member. More...
virtual void Reset (void) Reset the whole object. More...
CSerialObject (void) virtual ~CSerialObject (void) virtual const CTypeInfo * GetThisTypeInfo (void) const =0 virtual void Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive) Set object to copy of another one. More...
virtual bool Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const Check if both objects contain the same values. More...
virtual void DebugDump (CDebugDumpContext ddc, unsigned int depth) const Define method for dumping debug information. More...
void ThrowUnassigned (TMemberIndex index) const void ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const bool HasNamespaceName (void) const Check if object data type has namespace name. More...
const string & GetNamespaceName (void) const Get namespace name. More...
bool HasNamespacePrefix (void) const Check if data type has namespace prefix. More...
const string & GetNamespacePrefix (void) const Get namespace prefix. More...
CObject (void) Constructor. More...
CObject (const CObject &src) Copy constructor. More...
virtual ~CObject (void) Destructor. More...
CObject & operator= (const CObject &src) THROWS_NONE Assignment operator. More...
bool CanBeDeleted (void) const THROWS_NONE Check if object can be deleted. More...
bool IsAllocatedInPool (void) const THROWS_NONE Check if object is allocated in memory pool (not system heap) More...
bool Referenced (void) const THROWS_NONE Check if object is referenced. More...
bool ReferencedOnlyOnce (void) const THROWS_NONE Check if object is referenced only once. More...
void AddReference (void) const Add reference to object. More...
void RemoveReference (void) const Remove reference to object. More...
void ReleaseReference (void) const Remove reference without deleting object. More...
virtual void DoNotDeleteThisObject (void) Mark this object as not allocated in heap – do not delete this object. More...
virtual void DoDeleteThisObject (void) Mark this object as allocated in heap – object can be deleted. More...
void * operator new (size_t size) Define new operator for memory allocation. More...
void * operator new[] (size_t size) Define new[] operator for 'array' memory allocation. More...
void operator delete (void *ptr) Define delete operator for memory deallocation. More...
void operator delete[] (void *ptr) Define delete[] operator for memory deallocation. More...
void * operator new (size_t size, void *place) Define new operator. More...
void operator delete (void *ptr, void *place) Define delete operator. More...
void * operator new (size_t size, CObjectMemoryPool *place) Define new operator using memory pool. More...
void operator delete (void *ptr, CObjectMemoryPool *place) Define delete operator. More...
CDebugDumpable (void) virtual ~CDebugDumpable (void) void DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const void DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const void DumpToConsole (void) const
Atomic coordinates may be assigned literally or by reference to another biostruc.
The reference coordinate type is used to represent homology- derived model structures. PDB-derived structures have literal coordinates. Referenced coordinates identify another biostruc, any transformation to be applied to coordinates from that biostruc, and a mapping of the chemical graph of the present biostruc onto that of the referenced biostruc. They give an "alignment" of atoms in the current biostruc with those in another, from which the coordinates of matched atoms may be retrieved. For non- atomic models "alignment" may also be represented by molecule and residue equivalence lists. Referenced coordinates are a data item inteded for representation of homology models, with an explicit pointer to their source information. They do not occur in PDB-derived models.
CModel_coordinate_set_Base –
Definition at line 91 of file Model_coordinate_set_.hpp.
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