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NCBI C++ ToolKit: CModAdder Class Reference

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#include <objtools/readers/mod_reader.hpp>

static const string &  x_GetModName (const TModEntry &mod_entry)   static const string &  x_GetModValue (const TModEntry &mod_entry)   static bool  x_TrySeqInstMod (const TModEntry &mod_entry, CSeq_inst &seq_inst, TSkippedMods &skipped_mods, FPostMessage fPostMessage)   static void  x_SetStrand (const TModEntry &mod_entry, CSeq_inst &seq_inst, TSkippedMods &skipped_mods, FPostMessage fPostMessage)   static void  x_SetMolecule (const TModEntry &mod_entry, CSeq_inst &seq_inst, TSkippedMods &skipped_mods, FPostMessage fPostMessage)   static void  x_SetMoleculeFromMolType (const TModEntry &mod_entry, CSeq_inst &seq_inst)   static void  x_SetTopology (const TModEntry &mod_entry, CSeq_inst &seq_inst, TSkippedMods &skipped_mods, FPostMessage fPostMessage)   static void  x_SetHist (const TModEntry &mod_entry, CSeq_inst &seq_inst)   static void  x_ReportInvalidValue (const CModData &mod_data, TSkippedMods &skipped_mods, FPostMessage fPostMessage)  

Definition at line 150 of file mod_reader.hpp.

◆ FPostMessage ◆ FReportError ◆ TModEntry ◆ TMods ◆ TSkippedMods ◆ Apply() [1/2]

Definition at line 459 of file mod_reader.cpp.

References CDescrModApply::Apply(), CFeatModApply::Apply(), eDiag_Error, eDiag_Info, eDiag_Warning, eModSubcode_Applied, eModSubcode_Undefined, eModSubcode_Unrecognized, CModHandler::GetMods(), CException::GetMsg(), kEmptyStr, msg(), NCBI_THROW, CBioseq_Base::SetInst(), x_GetModName(), x_SetHist(), x_SetMoleculeFromMolType(), and x_TrySeqInstMod().

◆ Apply() [2/2] ◆ x_GetModName() ◆ x_GetModValue() ◆ x_ReportInvalidValue() ◆ x_SetHist()

Definition at line 670 of file mod_reader.cpp.

References SSeqIdRange::begin(), SSeqIdRange::end(), NStr::fSplit_Tokenize, mod(), Ref(), CSeq_inst_Base::SetHist(), NStr::Split(), transform(), NStr::TruncateSpaces_Unsafe(), val, and rapidjson::value.

Referenced by Apply().

◆ x_SetMolecule() ◆ x_SetMoleculeFromMolType() ◆ x_SetStrand() ◆ x_SetTopology() ◆ x_TrySeqInstMod()

The documentation for this class was generated from the following files:

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