Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/classCMiscSeqTableColumn.html below:
NCBI C++ ToolKit: CMiscSeqTableColumn Class Reference
Search Toolkit Book for CMiscSeqTableColumn
#include <gui/packages/pkg_sequence_edit/miscedit_util.hpp>
CMiscSeqTableColumn (const string &name) ~CMiscSeqTableColumn () bool IsFeature () const bool IsSource () const vector< CConstRef< CObject > > GetObjects (objects::CBioseq_Handle bsh) vector< CConstRef< CObject > > GetObjects (objects::CSeq_entry_Handle seh, const string &constraint_field, CRef< objects::edit::CStringConstraint > string_constraint) vector< CConstRef< CObject > > GetRelatedObjects (const CObject &object, CRef< objects::CScope > scope) vector< CConstRef< CObject > > GetRelatedObjects (const objects::edit::CApplyObject &object) vector< CRef< objects::edit::CApplyObject > > GetApplyObjects (objects::CBioseq_Handle bsh) vector< CRef< objects::edit::CApplyObject > > GetApplyObjects (objects::CSeq_entry_Handle seh, const string &constraint_field, CRef< objects::edit::CStringConstraint > string_constraint) void GetApplyObjectsValues (objects::CSeq_entry_Handle seh, const string &constraint_field, set< string > &values) void AddApplyObjectValue (const objects::edit::CApplyObject &object, const string &field, set< string > &values) vector< CRef< objects::edit::CApplyObject > > GetRelatedApplyObjects (objects::edit::CApplyObject &object) string GetVal (const CObject &object) vector< string > GetVals (const CObject &object) bool IsEmpty (const CObject &object) const void ClearVal (CObject &object) CRef< CCmdComposite > ClearValCmd (CConstRef< CObject > object, bool update_mrna_product, objects::CScope &scope) bool SetVal (CObject &object, const string &val, objects::edit::EExistingText existing_text) CRef< CCmdComposite > SetValCmd (CConstRef< CObject > object, const string &val, objects::edit::EExistingText existing_text, objects::CScope &scope, bool update_mrna_product=false) CRef< CCmdComposite > ConvertValCmd (objects::edit::CApplyObject &object, CMiscSeqTableColumn &other, objects::edit::EExistingText existing_text, objects::ECapChange cap_change, const bool leave_original, const string &field_name, const bool update_mrna_product) CRef< CCmdComposite > ConvertValCmd (CRef< objects::edit::CApplyObject > src_object, CRef< objects::edit::CApplyObject > dst_object, CMiscSeqTableColumn &other, objects::edit::EExistingText existing_text, objects::ECapChange cap_change, const bool leave_original, const string &field_name, const bool update_mrna_product) CRef< CCmdComposite > CopyValCmd (objects::edit::CApplyObject &object, CMiscSeqTableColumn &other, objects::edit::EExistingText existing_text, bool update_mrna_product) CRef< CCmdComposite > CopyValCmd (CRef< objects::edit::CApplyObject > src_object, CRef< objects::edit::CApplyObject > dst_object, CMiscSeqTableColumn &other, objects::edit::EExistingText existing_text, bool update_mrna_product) CRef< CCmdComposite > SwapValCmd (objects::edit::CApplyObject &object, CMiscSeqTableColumn &other, objects::edit::EExistingText existing_text, bool update_mrna_product) CRef< CCmdComposite > SwapValCmd (CRef< objects::edit::CApplyObject > src_object, CRef< objects::edit::CApplyObject > dst_object, CMiscSeqTableColumn &other, objects::edit::EExistingText existing_text, bool update_mrna_product) CRef< CCmdComposite > ParseValCmd (objects::edit::CApplyObject &object, CMiscSeqTableColumn &other, const objects::edit::CParseTextOptions &parse_options, objects::edit::EExistingText existing_text, bool update_mrna_product) CRef< CCmdComposite > ParseValCmd (CRef< objects::edit::CApplyObject > src_object, CRef< objects::edit::CApplyObject > dst_object, CMiscSeqTableColumn &other, const objects::edit::CParseTextOptions &parse_options, objects::edit::EExistingText existing_text, bool update_mrna_product) string IsValid (const string &val) vector< string > IsValid (const vector< string > &values) int CountConflicts (set< CConstRef< CObject > > objs, const string &val) int CountConflicts (const CObject &obj, const string &val) CRef< CObject > GetNewObject (CConstRef< CObject > obj) CRef< CCmdComposite > GetReplacementCommand (CConstRef< CObject >, CRef< CObject > newobj, objects::CScope &scope, const string &cmd_name) objects::CSeqFeatData::ESubtype GetFeatureSubtype () objects::CSeqdesc::E_Choice GetDescriptorSubtype () void SetConstraint (string field, CRef< objects::edit::CStringConstraint > string_constraint) bool AllowMultipleValues () bool IsProductField (void) void SetScope (CRef< objects::CScope > scope) CObject (void) Constructor. More...
CObject (const CObject &src) Copy constructor. More...
virtual ~CObject (void) Destructor. More...
CObject & operator= (const CObject &src) THROWS_NONE Assignment operator. More...
bool CanBeDeleted (void) const THROWS_NONE Check if object can be deleted. More...
bool IsAllocatedInPool (void) const THROWS_NONE Check if object is allocated in memory pool (not system heap) More...
bool Referenced (void) const THROWS_NONE Check if object is referenced. More...
bool ReferencedOnlyOnce (void) const THROWS_NONE Check if object is referenced only once. More...
void AddReference (void) const Add reference to object. More...
void RemoveReference (void) const Remove reference to object. More...
void ReleaseReference (void) const Remove reference without deleting object. More...
virtual void DoNotDeleteThisObject (void) Mark this object as not allocated in heap – do not delete this object. More...
virtual void DoDeleteThisObject (void) Mark this object as allocated in heap – object can be deleted. More...
void * operator new (size_t size) Define new operator for memory allocation. More...
void * operator new[] (size_t size) Define new[] operator for 'array' memory allocation. More...
void operator delete (void *ptr) Define delete operator for memory deallocation. More...
void operator delete[] (void *ptr) Define delete[] operator for memory deallocation. More...
void * operator new (size_t size, void *place) Define new operator. More...
void operator delete (void *ptr, void *place) Define delete operator. More...
void * operator new (size_t size, CObjectMemoryPool *place) Define new operator using memory pool. More...
void operator delete (void *ptr, CObjectMemoryPool *place) Define delete operator. More...
virtual void DebugDump (CDebugDumpContext ddc, unsigned int depth) const Define method for dumping debug information. More...
CDebugDumpable (void) virtual ~CDebugDumpable (void) void DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const void DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const void DumpToConsole (void) const
Definition at line 351 of file miscedit_util.hpp.
◆ CMiscSeqTableColumn() CMiscSeqTableColumn::CMiscSeqTableColumn ( const string & name )
Definition at line 1941 of file miscedit_util.cpp.
References CSrcTableColumnBaseFactory::Create(), CFieldHandlerFactory::Create(), CFeatureSeqTableColumnBaseFactory::Create(), CSeqFeatData_Base::e_not_set, CSeqFeatData_Base::e_Rna, NStr::EqualNocase(), CSeqFeatData::eSubtype_bad, CSeqFeatData::eSubtype_prot, NStr::Find(), ncbi::grid::netcache::search::fields::key, m_Feature, m_FieldHandler, m_Src, NULL, CRef< C, Locker >::Reset(), CFeatureSeqTableColumnBase::SetMajorType(), NStr::StartsWith(), and CSeqFeatData::SubtypeNameToValue().
Referenced by AddApplyObjectValue().
◆ ~CMiscSeqTableColumn() CMiscSeqTableColumn::~CMiscSeqTableColumn ( ) inline
Definition at line 355 of file miscedit_util.hpp.
◆ AddApplyObjectValue() void CMiscSeqTableColumn::AddApplyObjectValue ( const objects::edit::CApplyObject & object, const string & field, set< string > & values ) ◆ AllowMultipleValues() bool CMiscSeqTableColumn::AllowMultipleValues ( ) ◆ ClearVal() void CMiscSeqTableColumn::ClearVal ( CObject & object ) ◆ ClearValCmd()
Definition at line 2245 of file miscedit_util.cpp.
References CSerialObject::Assign(), ClearVal(), cmd, CScope::GetSeq_featHandle(), GetSeqEntryForSeqdesc(), GetVal(), NStr::IsBlank(), IsEmpty(), NULL, Ref(), and UpdatemRNAProduct().
◆ ConvertValCmd() [1/2] ◆ ConvertValCmd() [2/2] ◆ CopyValCmd() [1/2] ◆ CopyValCmd() [2/2] ◆ CountConflicts() [1/2] ◆ CountConflicts() [2/2] ◆ GetApplyObjects() [1/2] ◆ GetApplyObjects() [2/2] vector<CRef<objects::edit::CApplyObject> > CMiscSeqTableColumn::GetApplyObjects ( objects::CSeq_entry_Handle seh, const string & constraint_field, CRef< objects::edit::CStringConstraint > string_constraint ) ◆ GetApplyObjectsValues() void CMiscSeqTableColumn::GetApplyObjectsValues ( objects::CSeq_entry_Handle seh, const string & constraint_field, set< string > & values )
Definition at line 2127 of file miscedit_util.cpp.
References AddApplyObjectValue(), CSrcTableColumnBase::GetApplyObjects(), CFeatureSeqTableColumnBase::GetObjects(), CSeq_entry_Handle::GetScope(), ITERATE, m_Feature, m_FieldHandler, m_Src, and NON_CONST_ITERATE.
Referenced by CFieldSubpanel::OnSelectButton(), CTextSubpanel::SetClusters(), and CFieldSubpanel::SetClusters().
◆ GetDescriptorSubtype() ◆ GetFeatureSubtype() ◆ GetNewObject() ◆ GetObjects() [1/2] vector<CConstRef<CObject> > CMiscSeqTableColumn::GetObjects ( objects::CBioseq_Handle bsh )
Referenced by CCdsToMatPeptide::ConvertEach(), CCdsToMatPeptide::ConvertInner(), CSequenceEditingEventHandler::EditStructuredCommentPrefixSuffix(), CCdsFromGeneMrnaExon::GetCommand(), CConvertCdsToMiscFeat::GetCommand(), CConvertFeatDlg::GetCommand(), CExtendPartialFeatDlg::GetCommand(), CGeneFeatFromOtherFeatDlg::GetCommand(), CmRNAFromGeneCdsExon::GetCommand(), CtRNAFromGene::GetCommand(), CRetranslateCDS::GetCommand(), CCdsToMatPeptide::MergeConvert(), CSelectFeatures::OnAccept(), CSequenceEditingEventHandler::ResynchronizePartials(), and CCorrectGenesDialog::x_GetConstrainedList().
◆ GetObjects() [2/2] vector<CConstRef<CObject> > CMiscSeqTableColumn::GetObjects ( objects::CSeq_entry_Handle seh, const string & constraint_field, CRef< objects::edit::CStringConstraint > string_constraint ) ◆ GetRelatedApplyObjects() vector< CRef< CApplyObject > > CMiscSeqTableColumn::GetRelatedApplyObjects ( objects::edit::CApplyObject & object )
Definition at line 3516 of file miscedit_util.cpp.
References CBioseq_set_Base::eClass_nuc_prot, f, GetApplyObjects(), CSeq_entry_Handle::GetBioseqHandle(), CBioseq_set_Handle::GetClass(), CSeq_feat_Base::GetData(), GetFeatureSubtype(), CSeq_entry_Handle::GetParentBioseq_set(), CBioseq_set_Handle::GetParentEntry(), GetRelatedFeatureApplyObjects(), GetScope(), CSeqFeatData::GetSubtype(), CSeqFeatData_Base::IsBiosrc(), IsFeature(), CBioseq_set_Handle::IsSetClass(), CSeq_feat_Base::IsSetData(), IsSource(), CSeqdesc_Base::IsSource(), m_FieldHandler, NULL, and s_GetNPParent().
◆ GetRelatedObjects() [1/2] ◆ GetRelatedObjects() [2/2] vector<CConstRef<CObject> > CMiscSeqTableColumn::GetRelatedObjects ( const objects::edit::CApplyObject & object ) ◆ GetReplacementCommand() ◆ GetVal() ◆ GetVals() ◆ IsEmpty() ◆ IsFeature() bool CMiscSeqTableColumn::IsFeature ( ) const inline ◆ IsProductField() bool CMiscSeqTableColumn::IsProductField ( void ) ◆ IsSource() bool CMiscSeqTableColumn::IsSource ( ) const inline ◆ IsValid() [1/2] ◆ IsValid() [2/2] ◆ ParseValCmd() [1/2] ◆ ParseValCmd() [2/2] ◆ s_IsSequenceIDField() ◆ SetConstraint() void CMiscSeqTableColumn::SetConstraint ( string field, CRef< objects::edit::CStringConstraint > string_constraint ) ◆ SetScope() void CMiscSeqTableColumn::SetScope ( CRef< objects::CScope > scope ) ◆ SetVal()
Definition at line 2303 of file miscedit_util.cpp.
References CSrcTableColumnBase::AddToBioSource(), CFeatureSeqTableColumnBase::AddToFeature(), CSeq_feat_Base::GetData(), CSeqFeatData_Base::IsBiosrc(), CSeq_feat_Base::IsSetData(), CSeqdesc_Base::IsSource(), m_Feature, m_FieldHandler, m_Src, CSeq_feat_Base::SetData(), CSeqdesc_Base::SetSource(), and val.
Referenced by CSequenceEditingEventHandler::EditStructuredCommentPrefixSuffix(), CLowerQuals::GetCommand(), CRemoveTextInsideStrDlg::GetCommand(), and SetValCmd().
◆ SetValCmd() ◆ SwapValCmd() [1/2] ◆ SwapValCmd() [2/2] ◆ x_GetMrnaUpdate() [1/2] ◆ x_GetMrnaUpdate() [2/2] ◆ m_Feature
Definition at line 398 of file miscedit_util.hpp.
Referenced by AllowMultipleValues(), ClearVal(), CMiscSeqTableColumn(), GetApplyObjectsValues(), GetFeatureSubtype(), GetVal(), GetVals(), IsFeature(), IsProductField(), IsValid(), SetScope(), and SetVal().
◆ m_FieldHandler CRef<ncbi::CFieldHandler> CMiscSeqTableColumn::m_FieldHandler private
Definition at line 400 of file miscedit_util.hpp.
Referenced by AllowMultipleValues(), ClearVal(), CMiscSeqTableColumn(), GetApplyObjectsValues(), GetDescriptorSubtype(), GetRelatedApplyObjects(), GetVal(), GetVals(), IsEmpty(), IsValid(), SetConstraint(), SetScope(), and SetVal().
◆ m_Src
The documentation for this class was generated from the following files:
RetroSearch is an open source project built by @garambo
| Open a GitHub Issue
Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo
HTML:
3.2
| Encoding:
UTF-8
| Version:
0.7.4