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NCBI C++ ToolKit: CMarkovChainArray< order

Search Toolkit Book for CMarkovChainArray

#include "hmm.hpp"
(Private to src/algo/gnomon.)

Inheritance diagram for CMarkovChainArray< order >:

[legend] Public Member Functions void  InitScore (int l, const objects::CMarkov_chain_array &from)   double  Score (const EResidue *seq) const   Private Attributes int  m_length   vector< CMarkovChain< order > >  m_mc   Detailed Description template<int order>
class CMarkovChainArray< order >

Definition at line 85 of file hmm.hpp.

Member Function Documentation ◆ InitScore()

template<int order>

void CMarkovChainArray< order >::InitScore ( int  l, const objects::CMarkov_chain_array &  from  )

Definition at line 94 of file hmm_inlines.hpp.

References CInputModel::Error(), CMarkov_chain_array_Base::GetMatrix(), i, and l().

Referenced by CWAM_Stop::CWAM_Stop(), and CWMM_Start::CWMM_Start().

◆ Score()

template<int order>

double CMarkovChainArray< order >::Score ( const EResidue *  seq ) const

Definition at line 82 of file hmm_inlines.hpp.

References i.

Referenced by CWMM_Start::Score(), and CWAM_Stop::Score().

Member Data Documentation ◆ m_length

template<int order>

int CMarkovChainArray< order >::m_length private

Definition at line 91 of file hmm.hpp.

◆ m_mc

template<int order>

vector< CMarkovChain<order> > CMarkovChainArray< order >::m_mc private

Definition at line 92 of file hmm.hpp.

The documentation for this class was generated from the following files:

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