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NCBI C++ ToolKit: CMacroBioData_SeqIter Class Reference
virtual ~CMacroBioData_SeqIter () virtual IMacroBioDataIter & Begin (void) virtual IMacroBioDataIter & Next (void) virtual bool IsEnd (void) const virtual bool IsBegin (void) virtual SConstScopedObject GetScopedObject () const Dereferences the underlying iterator. More...
virtual string GetBestDescr () const Used for logging. More...
virtual void BuildEditedObject () Creates a copy of the object that will be edited. More...
virtual void RunEditCommand (CMacroCmdComposite *cmd_composite) Constructs and executes the editing command. More...
virtual void RunDeleteCommand (CMacroCmdComposite *cmd_composite) Constructs and executes the delete command. More...
virtual bool IsDescriptor () const virtual bool IsFeature () const virtual objects::CBioseq_Handle GetBioseqHandle (void) const const objects::CAutoDefOptions & GetAutodefOptions () const objects::CAutoDefOptions & SetAutodefOptions () virtual ~IMacroBioDataIter () virtual size_t GetCount () const CObjectInfo GetEditedObject () void RunCommand (CRef< CCmdComposite > cmd, CMacroCmdComposite *cmd_composite) Method for executing a specific command. More...
bool IntendToDelete () const virtual void SetToDelete (bool intent) bool IsModified () const void SetModified () bool GetChoiceType (const string &field_name, string &choice_type) const returns choice type string for a given identifier field_name More...
virtual const vector< string > & GetTaxnames () const objects::CSeq_entry_Handle GetSEH () const bool HasBeenCompleted () const void SetCompleted () bool IsSetSeqSubmit (void) const const objects::CSeq_submit & GetSeqSubmit (void) const void SetSeqSubmit (const objects::CSeq_submit &submit) void SetOutputStream (CNcbiOstream *str) bool IsSetOutputStream () const CNcbiOstream & GetOutputStream () const void SetTableToApply (const string &file_name, size_t match_col, const string &delimiter, bool merge_de, bool split_firstcol, bool convert_multi, bool merge_firstcols, bool multiple_sp_only) const string & GetTableName () const string GetValueFromTable (size_t col) bool FindInTable (const CMQueryNodeValue::TObs &objs, bool case_sensitive=true) bool FindInTable (const vector< string > &strs, bool case_sensitive=true) string GetUnMatchedTableEntries (int &count) void SetHugeDataMode (bool value) bool IsHugeDataMode () const auto & RemoteUpdater () auto & DOIUpdater () auto & ISOJTAUpdater () bool TopLevelObject () const objects::CObject_id::TId & MaxFeatureId () void SetHugeContext (const shared_ptr< CHugeMacroContext > &context) CObject (void) Constructor. More...
CObject (const CObject &src) Copy constructor. More...
virtual ~CObject (void) Destructor. More...
CObject & operator= (const CObject &src) THROWS_NONE Assignment operator. More...
bool CanBeDeleted (void) const THROWS_NONE Check if object can be deleted. More...
bool IsAllocatedInPool (void) const THROWS_NONE Check if object is allocated in memory pool (not system heap) More...
bool Referenced (void) const THROWS_NONE Check if object is referenced. More...
bool ReferencedOnlyOnce (void) const THROWS_NONE Check if object is referenced only once. More...
void AddReference (void) const Add reference to object. More...
void RemoveReference (void) const Remove reference to object. More...
void ReleaseReference (void) const Remove reference without deleting object. More...
virtual void DoNotDeleteThisObject (void) Mark this object as not allocated in heap – do not delete this object. More...
virtual void DoDeleteThisObject (void) Mark this object as allocated in heap – object can be deleted. More...
void * operator new (size_t size) Define new operator for memory allocation. More...
void * operator new[] (size_t size) Define new[] operator for 'array' memory allocation. More...
void operator delete (void *ptr) Define delete operator for memory deallocation. More...
void operator delete[] (void *ptr) Define delete[] operator for memory deallocation. More...
void * operator new (size_t size, void *place) Define new operator. More...
void operator delete (void *ptr, void *place) Define delete operator. More...
void * operator new (size_t size, CObjectMemoryPool *place) Define new operator using memory pool. More...
void operator delete (void *ptr, CObjectMemoryPool *place) Define delete operator. More...
virtual void DebugDump (CDebugDumpContext ddc, unsigned int depth) const Define method for dumping debug information. More...
CDebugDumpable (void) virtual ~CDebugDumpable (void) void DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const void DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const void DumpToConsole (void) const
CMacroBioData_SeqIter- iterates over sequences (na and aa)
Definition at line 730 of file macro_biodata_iter.hpp.
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