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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/classCMSSearchSettings__Base.html below:

NCBI C++ ToolKit: CMSSearchSettings_Base Class Reference

enum class E_memberIndex {
  e__allMandatory = 0 , e_precursorsearchtype , e_productsearchtype , e_ionstosearch ,
  e_peptol , e_msmstol , e_zdep , e_cutoff ,
  e_cutlo , e_cuthi , e_cutinc , e_singlewin ,
  e_doublewin , e_singlenum , e_doublenum , e_fixed ,
  e_variable , e_enzyme , e_missedcleave , e_hitlistlen ,
  e_db , e_tophitnum , e_minhit , e_minspectra ,
  e_scale , e_maxmods , e_taxids , e_chargehandling ,
  e_usermods , e_pseudocount , e_searchb1 , e_searchctermproduct ,
  e_maxproductions , e_minnoenzyme , e_maxnoenzyme , e_exactmass ,
  e_settingid , e_iterativesettings , e_precursorcull , e_infiles ,
  e_outfiles , e_nocorrelationscore , e_probfollowingion , e_nmethionine ,
  e_automassadjust , e_lomasscutoff , e_libsearchsettings , e_noprolineions ,
  e_reversesearch , e_othersettings , e_numisotopes , e_pepppm ,
  e_msmsppm , e_reportedhitcount
} typedef int TPrecursorsearchtype typedef int TProductsearchtype typedef list< int > TIonstosearch typedef double TPeptol typedef double TMsmstol typedef int TZdep typedef double TCutoff typedef double TCutlo typedef double TCuthi typedef double TCutinc typedef int TSinglewin typedef int TDoublewin typedef int TSinglenum typedef int TDoublenum typedef list< int > TFixed typedef list< int > TVariable typedef int TEnzyme typedef int TMissedcleave typedef int THitlistlen typedef string TDb typedef int TTophitnum typedef int TMinhit typedef int TMinspectra typedef int TScale typedef int TMaxmods typedef list< int > TTaxids typedef CMSChargeHandle TChargehandling typedef CMSModSpecSet TUsermods typedef int TPseudocount typedef int TSearchb1 typedef int TSearchctermproduct typedef int TMaxproductions typedef int TMinnoenzyme typedef int TMaxnoenzyme typedef double TExactmass typedef int TSettingid typedef CMSIterativeSettings TIterativesettings typedef int TPrecursorcull typedef list< CRef< CMSInFile > > TInfiles typedef list< CRef< CMSOutFile > > TOutfiles typedef int TNocorrelationscore typedef double TProbfollowingion typedef bool TNmethionine typedef double TAutomassadjust typedef double TLomasscutoff typedef CMSLibrarySettings TLibsearchsettings typedef list< int > TNoprolineions typedef bool TReversesearch typedef list< CRef< CNameValue > > TOthersettings typedef int TNumisotopes typedef bool TPepppm typedef bool TMsmsppm typedef int TReportedhitcount typedef Tparent::CMemberIndex< E_memberIndex, 54 > TmemberIndex enum EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern } Control filling of newly allocated memory. More...
typedef CObjectCounterLocker TLockerType Default locker type for CRef. More...
typedef atomic< Uint8 > TCounter Counter type is CAtomiCounter. More...
typedef Uint8 TCount Alias for value type of counter. More...
CMSSearchSettings_Base (void) virtual ~CMSSearchSettings_Base (void) DECLARE_INTERNAL_TYPE_INFO () bool IsSetPrecursorsearchtype (void) const average or monoisotopic? Check if a value has been assigned to Precursorsearchtype data member. More...
bool CanGetPrecursorsearchtype (void) const Check if it is safe to call GetPrecursorsearchtype method. More...
void ResetPrecursorsearchtype (void) Reset Precursorsearchtype data member. More...
TPrecursorsearchtype GetPrecursorsearchtype (void) const Get the Precursorsearchtype member data. More...
void SetPrecursorsearchtype (TPrecursorsearchtype value) Assign a value to Precursorsearchtype data member. More...
TPrecursorsearchtype & SetPrecursorsearchtype (void) Assign a value to Precursorsearchtype data member. More...
bool IsSetProductsearchtype (void) const average or monoisotopic? Check if a value has been assigned to Productsearchtype data member. More...
bool CanGetProductsearchtype (void) const Check if it is safe to call GetProductsearchtype method. More...
void ResetProductsearchtype (void) Reset Productsearchtype data member. More...
TProductsearchtype GetProductsearchtype (void) const Get the Productsearchtype member data. More...
void SetProductsearchtype (TProductsearchtype value) Assign a value to Productsearchtype data member. More...
TProductsearchtype & SetProductsearchtype (void) Assign a value to Productsearchtype data member. More...
bool IsSetIonstosearch (void) const which ions to search? Check if a value has been assigned to Ionstosearch data member. More...
bool CanGetIonstosearch (void) const Check if it is safe to call GetIonstosearch method. More...
void ResetIonstosearch (void) Reset Ionstosearch data member. More...
const TIonstosearch & GetIonstosearch (void) const Get the Ionstosearch member data. More...
TIonstosearch & SetIonstosearch (void) Assign a value to Ionstosearch data member. More...
bool IsSetPeptol (void) const peptide mass tolerance Check if a value has been assigned to Peptol data member. More...
bool CanGetPeptol (void) const Check if it is safe to call GetPeptol method. More...
void ResetPeptol (void) Reset Peptol data member. More...
TPeptol GetPeptol (void) const Get the Peptol member data. More...
void SetPeptol (TPeptol value) Assign a value to Peptol data member. More...
TPeptol & SetPeptol (void) Assign a value to Peptol data member. More...
bool IsSetMsmstol (void) const msms mass tolerance Check if a value has been assigned to Msmstol data member. More...
bool CanGetMsmstol (void) const Check if it is safe to call GetMsmstol method. More...
void ResetMsmstol (void) Reset Msmstol data member. More...
TMsmstol GetMsmstol (void) const Get the Msmstol member data. More...
void SetMsmstol (TMsmstol value) Assign a value to Msmstol data member. More...
TMsmstol & SetMsmstol (void) Assign a value to Msmstol data member. More...
bool IsSetZdep (void) const what is the charge dependence of the mass tolerance? Check if a value has been assigned to Zdep data member. More...
bool CanGetZdep (void) const Check if it is safe to call GetZdep method. More...
void ResetZdep (void) Reset Zdep data member. More...
TZdep GetZdep (void) const Get the Zdep member data. More...
void SetZdep (TZdep value) Assign a value to Zdep data member. More...
TZdep & SetZdep (void) Assign a value to Zdep data member. More...
bool IsSetCutoff (void) const evalue cutoff next 3 fields define intensity fraction below which peaks will be discard Check if a value has been assigned to Cutoff data member. More...
bool CanGetCutoff (void) const Check if it is safe to call GetCutoff method. More...
void ResetCutoff (void) Reset Cutoff data member. More...
TCutoff GetCutoff (void) const Get the Cutoff member data. More...
void SetCutoff (TCutoff value) Assign a value to Cutoff data member. More...
TCutoff & SetCutoff (void) Assign a value to Cutoff data member. More...
bool IsSetCutlo (void) const the start of the cutoff, fraction of most intense peak Check if a value has been assigned to Cutlo data member. More...
bool CanGetCutlo (void) const Check if it is safe to call GetCutlo method. More...
void ResetCutlo (void) Reset Cutlo data member. More...
TCutlo GetCutlo (void) const Get the Cutlo member data. More...
void SetCutlo (TCutlo value) Assign a value to Cutlo data member. More...
TCutlo & SetCutlo (void) Assign a value to Cutlo data member. More...
bool IsSetCuthi (void) const the end of the cutoff Check if a value has been assigned to Cuthi data member. More...
bool CanGetCuthi (void) const Check if it is safe to call GetCuthi method. More...
void ResetCuthi (void) Reset Cuthi data member. More...
TCuthi GetCuthi (void) const Get the Cuthi member data. More...
void SetCuthi (TCuthi value) Assign a value to Cuthi data member. More...
TCuthi & SetCuthi (void) Assign a value to Cuthi data member. More...
bool IsSetCutinc (void) const the increment of the cutoff Check if a value has been assigned to Cutinc data member. More...
bool CanGetCutinc (void) const Check if it is safe to call GetCutinc method. More...
void ResetCutinc (void) Reset Cutinc data member. More...
TCutinc GetCutinc (void) const Get the Cutinc member data. More...
void SetCutinc (TCutinc value) Assign a value to Cutinc data member. More...
TCutinc & SetCutinc (void) Assign a value to Cutinc data member. More...
bool IsSetSinglewin (void) const the size of the single charge filtering window Check if a value has been assigned to Singlewin data member. More...
bool CanGetSinglewin (void) const Check if it is safe to call GetSinglewin method. More...
void ResetSinglewin (void) Reset Singlewin data member. More...
TSinglewin GetSinglewin (void) const Get the Singlewin member data. More...
void SetSinglewin (TSinglewin value) Assign a value to Singlewin data member. More...
TSinglewin & SetSinglewin (void) Assign a value to Singlewin data member. More...
bool IsSetDoublewin (void) const the size of the double charge filtering window Check if a value has been assigned to Doublewin data member. More...
bool CanGetDoublewin (void) const Check if it is safe to call GetDoublewin method. More...
void ResetDoublewin (void) Reset Doublewin data member. More...
TDoublewin GetDoublewin (void) const Get the Doublewin member data. More...
void SetDoublewin (TDoublewin value) Assign a value to Doublewin data member. More...
TDoublewin & SetDoublewin (void) Assign a value to Doublewin data member. More...
bool IsSetSinglenum (void) const the number of peaks allowed in the single window Check if a value has been assigned to Singlenum data member. More...
bool CanGetSinglenum (void) const Check if it is safe to call GetSinglenum method. More...
void ResetSinglenum (void) Reset Singlenum data member. More...
TSinglenum GetSinglenum (void) const Get the Singlenum member data. More...
void SetSinglenum (TSinglenum value) Assign a value to Singlenum data member. More...
TSinglenum & SetSinglenum (void) Assign a value to Singlenum data member. More...
bool IsSetDoublenum (void) const the number of peaks allowed in the double window Check if a value has been assigned to Doublenum data member. More...
bool CanGetDoublenum (void) const Check if it is safe to call GetDoublenum method. More...
void ResetDoublenum (void) Reset Doublenum data member. More...
TDoublenum GetDoublenum (void) const Get the Doublenum member data. More...
void SetDoublenum (TDoublenum value) Assign a value to Doublenum data member. More...
TDoublenum & SetDoublenum (void) Assign a value to Doublenum data member. More...
bool IsSetFixed (void) const fixed PTM's Check if a value has been assigned to Fixed data member. More...
bool CanGetFixed (void) const Check if it is safe to call GetFixed method. More...
void ResetFixed (void) Reset Fixed data member. More...
const TFixed & GetFixed (void) const Get the Fixed member data. More...
TFixed & SetFixed (void) Assign a value to Fixed data member. More...
bool IsSetVariable (void) const variable PTM's Check if a value has been assigned to Variable data member. More...
bool CanGetVariable (void) const Check if it is safe to call GetVariable method. More...
void ResetVariable (void) Reset Variable data member. More...
const TVariable & GetVariable (void) const Get the Variable member data. More...
TVariable & SetVariable (void) Assign a value to Variable data member. More...
bool IsSetEnzyme (void) const digestion enzyme Check if a value has been assigned to Enzyme data member. More...
bool CanGetEnzyme (void) const Check if it is safe to call GetEnzyme method. More...
void ResetEnzyme (void) Reset Enzyme data member. More...
TEnzyme GetEnzyme (void) const Get the Enzyme member data. More...
void SetEnzyme (TEnzyme value) Assign a value to Enzyme data member. More...
TEnzyme & SetEnzyme (void) Assign a value to Enzyme data member. More...
bool IsSetMissedcleave (void) const number of missed cleaves allowed Check if a value has been assigned to Missedcleave data member. More...
bool CanGetMissedcleave (void) const Check if it is safe to call GetMissedcleave method. More...
void ResetMissedcleave (void) Reset Missedcleave data member. More...
TMissedcleave GetMissedcleave (void) const Get the Missedcleave member data. More...
void SetMissedcleave (TMissedcleave value) Assign a value to Missedcleave data member. More...
TMissedcleave & SetMissedcleave (void) Assign a value to Missedcleave data member. More...
bool IsSetHitlistlen (void) const the number of hits kept in memory for a spectrum Check if a value has been assigned to Hitlistlen data member. More...
bool CanGetHitlistlen (void) const Check if it is safe to call GetHitlistlen method. More...
void ResetHitlistlen (void) Reset Hitlistlen data member. More...
void SetDefaultHitlistlen (void) Assign default value to Hitlistlen data member. More...
THitlistlen GetHitlistlen (void) const Get the Hitlistlen member data. More...
void SetHitlistlen (THitlistlen value) Assign a value to Hitlistlen data member. More...
THitlistlen & SetHitlistlen (void) Assign a value to Hitlistlen data member. More...
bool IsSetDb (void) const sequence set to search, e.g. More...
bool CanGetDb (void) const Check if it is safe to call GetDb method. More...
void ResetDb (void) Reset Db data member. More...
const TDb & GetDb (void) const Get the Db member data. More...
void SetDb (const TDb &value) Assign a value to Db data member. More...
void SetDb (TDb &&value) TDb & SetDb (void) Assign a value to Db data member. More...
bool IsSetTophitnum (void) const number of m/z to consider in first pass Check if a value has been assigned to Tophitnum data member. More...
bool CanGetTophitnum (void) const Check if it is safe to call GetTophitnum method. More...
void ResetTophitnum (void) Reset Tophitnum data member. More...
TTophitnum GetTophitnum (void) const Get the Tophitnum member data. More...
void SetTophitnum (TTophitnum value) Assign a value to Tophitnum data member. More...
TTophitnum & SetTophitnum (void) Assign a value to Tophitnum data member. More...
bool IsSetMinhit (void) const minimum number of m/z values for a valid hit Check if a value has been assigned to Minhit data member. More...
bool CanGetMinhit (void) const Check if it is safe to call GetMinhit method. More...
void ResetMinhit (void) Reset Minhit data member. More...
void SetDefaultMinhit (void) Assign default value to Minhit data member. More...
TMinhit GetMinhit (void) const Get the Minhit member data. More...
void SetMinhit (TMinhit value) Assign a value to Minhit data member. More...
TMinhit & SetMinhit (void) Assign a value to Minhit data member. More...
bool IsSetMinspectra (void) const minimum number of m/z for a valid spectra Check if a value has been assigned to Minspectra data member. More...
bool CanGetMinspectra (void) const Check if it is safe to call GetMinspectra method. More...
void ResetMinspectra (void) Reset Minspectra data member. More...
void SetDefaultMinspectra (void) Assign default value to Minspectra data member. More...
TMinspectra GetMinspectra (void) const Get the Minspectra member data. More...
void SetMinspectra (TMinspectra value) Assign a value to Minspectra data member. More...
TMinspectra & SetMinspectra (void) Assign a value to Minspectra data member. More...
bool IsSetScale (void) const scale for m/z float to integer Check if a value has been assigned to Scale data member. More...
bool CanGetScale (void) const Check if it is safe to call GetScale method. More...
void ResetScale (void) Reset Scale data member. More...
void SetDefaultScale (void) Assign default value to Scale data member. More...
TScale GetScale (void) const Get the Scale member data. More...
void SetScale (TScale value) Assign a value to Scale data member. More...
TScale & SetScale (void) Assign a value to Scale data member. More...
bool IsSetMaxmods (void) const maximum number of mass ladders per database peptide Check if a value has been assigned to Maxmods data member. More...
bool CanGetMaxmods (void) const Check if it is safe to call GetMaxmods method. More...
void ResetMaxmods (void) Reset Maxmods data member. More...
void SetDefaultMaxmods (void) Assign default value to Maxmods data member. More...
TMaxmods GetMaxmods (void) const Get the Maxmods member data. More...
void SetMaxmods (TMaxmods value) Assign a value to Maxmods data member. More...
TMaxmods & SetMaxmods (void) Assign a value to Maxmods data member. More...
bool IsSetTaxids (void) const taxa to limit search Check if a value has been assigned to Taxids data member. More...
bool CanGetTaxids (void) const Check if it is safe to call GetTaxids method. More...
void ResetTaxids (void) Reset Taxids data member. More...
const TTaxids & GetTaxids (void) const Get the Taxids member data. More...
TTaxids & SetTaxids (void) Assign a value to Taxids data member. More...
bool IsSetChargehandling (void) const how to deal with charges Check if a value has been assigned to Chargehandling data member. More...
bool CanGetChargehandling (void) const Check if it is safe to call GetChargehandling method. More...
void ResetChargehandling (void) Reset Chargehandling data member. More...
const TChargehandling & GetChargehandling (void) const Get the Chargehandling member data. More...
void SetChargehandling (TChargehandling &value) Assign a value to Chargehandling data member. More...
TChargehandling & SetChargehandling (void) Assign a value to Chargehandling data member. More...
bool IsSetUsermods (void) const user defined modifications Check if a value has been assigned to Usermods data member. More...
bool CanGetUsermods (void) const Check if it is safe to call GetUsermods method. More...
void ResetUsermods (void) Reset Usermods data member. More...
const TUsermods & GetUsermods (void) const Get the Usermods member data. More...
void SetUsermods (TUsermods &value) Assign a value to Usermods data member. More...
TUsermods & SetUsermods (void) Assign a value to Usermods data member. More...
bool IsSetPseudocount (void) const min number of counts per precursor bin Check if a value has been assigned to Pseudocount data member. More...
bool CanGetPseudocount (void) const Check if it is safe to call GetPseudocount method. More...
void ResetPseudocount (void) Reset Pseudocount data member. More...
void SetDefaultPseudocount (void) Assign default value to Pseudocount data member. More...
TPseudocount GetPseudocount (void) const Get the Pseudocount member data. More...
void SetPseudocount (TPseudocount value) Assign a value to Pseudocount data member. More...
TPseudocount & SetPseudocount (void) Assign a value to Pseudocount data member. More...
bool IsSetSearchb1 (void) const should b1 product be in search (1=no, 0=yes) Check if a value has been assigned to Searchb1 data member. More...
bool CanGetSearchb1 (void) const Check if it is safe to call GetSearchb1 method. More...
void ResetSearchb1 (void) Reset Searchb1 data member. More...
void SetDefaultSearchb1 (void) Assign default value to Searchb1 data member. More...
TSearchb1 GetSearchb1 (void) const Get the Searchb1 member data. More...
void SetSearchb1 (TSearchb1 value) Assign a value to Searchb1 data member. More...
TSearchb1 & SetSearchb1 (void) Assign a value to Searchb1 data member. More...
bool IsSetSearchctermproduct (void) const should c terminus ion be searched (1=no, 0=yes) Check if a value has been assigned to Searchctermproduct data member. More...
bool CanGetSearchctermproduct (void) const Check if it is safe to call GetSearchctermproduct method. More...
void ResetSearchctermproduct (void) Reset Searchctermproduct data member. More...
void SetDefaultSearchctermproduct (void) Assign default value to Searchctermproduct data member. More...
TSearchctermproduct GetSearchctermproduct (void) const Get the Searchctermproduct member data. More...
void SetSearchctermproduct (TSearchctermproduct value) Assign a value to Searchctermproduct data member. More...
TSearchctermproduct & SetSearchctermproduct (void) Assign a value to Searchctermproduct data member. More...
bool IsSetMaxproductions (void) const max number of ions in each series (0=all) Check if a value has been assigned to Maxproductions data member. More...
bool CanGetMaxproductions (void) const Check if it is safe to call GetMaxproductions method. More...
void ResetMaxproductions (void) Reset Maxproductions data member. More...
void SetDefaultMaxproductions (void) Assign default value to Maxproductions data member. More...
TMaxproductions GetMaxproductions (void) const Get the Maxproductions member data. More...
void SetMaxproductions (TMaxproductions value) Assign a value to Maxproductions data member. More...
TMaxproductions & SetMaxproductions (void) Assign a value to Maxproductions data member. More...
bool IsSetMinnoenzyme (void) const min number of AA in peptide for noenzyme search Check if a value has been assigned to Minnoenzyme data member. More...
bool CanGetMinnoenzyme (void) const Check if it is safe to call GetMinnoenzyme method. More...
void ResetMinnoenzyme (void) Reset Minnoenzyme data member. More...
void SetDefaultMinnoenzyme (void) Assign default value to Minnoenzyme data member. More...
TMinnoenzyme GetMinnoenzyme (void) const Get the Minnoenzyme member data. More...
void SetMinnoenzyme (TMinnoenzyme value) Assign a value to Minnoenzyme data member. More...
TMinnoenzyme & SetMinnoenzyme (void) Assign a value to Minnoenzyme data member. More...
bool IsSetMaxnoenzyme (void) const max number of AA in peptide for noenzyme search (0=none) Check if a value has been assigned to Maxnoenzyme data member. More...
bool CanGetMaxnoenzyme (void) const Check if it is safe to call GetMaxnoenzyme method. More...
void ResetMaxnoenzyme (void) Reset Maxnoenzyme data member. More...
void SetDefaultMaxnoenzyme (void) Assign default value to Maxnoenzyme data member. More...
TMaxnoenzyme GetMaxnoenzyme (void) const Get the Maxnoenzyme member data. More...
void SetMaxnoenzyme (TMaxnoenzyme value) Assign a value to Maxnoenzyme data member. More...
TMaxnoenzyme & SetMaxnoenzyme (void) Assign a value to Maxnoenzyme data member. More...
bool IsSetExactmass (void) const the threshold in Da for adding neutron Check if a value has been assigned to Exactmass data member. More...
bool CanGetExactmass (void) const Check if it is safe to call GetExactmass method. More...
void ResetExactmass (void) Reset Exactmass data member. More...
TExactmass GetExactmass (void) const Get the Exactmass member data. More...
void SetExactmass (TExactmass value) Assign a value to Exactmass data member. More...
TExactmass & SetExactmass (void) Assign a value to Exactmass data member. More...
bool IsSetSettingid (void) const id of the search settings Check if a value has been assigned to Settingid data member. More...
bool CanGetSettingid (void) const Check if it is safe to call GetSettingid method. More...
void ResetSettingid (void) Reset Settingid data member. More...
TSettingid GetSettingid (void) const Get the Settingid member data. More...
void SetSettingid (TSettingid value) Assign a value to Settingid data member. More...
TSettingid & SetSettingid (void) Assign a value to Settingid data member. More...
bool IsSetIterativesettings (void) const iterative search settings Check if a value has been assigned to Iterativesettings data member. More...
bool CanGetIterativesettings (void) const Check if it is safe to call GetIterativesettings method. More...
void ResetIterativesettings (void) Reset Iterativesettings data member. More...
const TIterativesettings & GetIterativesettings (void) const Get the Iterativesettings member data. More...
void SetIterativesettings (TIterativesettings &value) Assign a value to Iterativesettings data member. More...
TIterativesettings & SetIterativesettings (void) Assign a value to Iterativesettings data member. More...
bool IsSetPrecursorcull (void) const turn on aggressive precursor culling for ETD (0=none) Check if a value has been assigned to Precursorcull data member. More...
bool CanGetPrecursorcull (void) const Check if it is safe to call GetPrecursorcull method. More...
void ResetPrecursorcull (void) Reset Precursorcull data member. More...
TPrecursorcull GetPrecursorcull (void) const Get the Precursorcull member data. More...
void SetPrecursorcull (TPrecursorcull value) Assign a value to Precursorcull data member. More...
TPrecursorcull & SetPrecursorcull (void) Assign a value to Precursorcull data member. More...
bool IsSetInfiles (void) const input files Check if a value has been assigned to Infiles data member. More...
bool CanGetInfiles (void) const Check if it is safe to call GetInfiles method. More...
void ResetInfiles (void) Reset Infiles data member. More...
const TInfiles & GetInfiles (void) const Get the Infiles member data. More...
TInfiles & SetInfiles (void) Assign a value to Infiles data member. More...
bool IsSetOutfiles (void) const output files Check if a value has been assigned to Outfiles data member. More...
bool CanGetOutfiles (void) const Check if it is safe to call GetOutfiles method. More...
void ResetOutfiles (void) Reset Outfiles data member. More...
const TOutfiles & GetOutfiles (void) const Get the Outfiles member data. More...
TOutfiles & SetOutfiles (void) Assign a value to Outfiles data member. More...
bool IsSetNocorrelationscore (void) const turn on correlation score (1=nocorr) Check if a value has been assigned to Nocorrelationscore data member. More...
bool CanGetNocorrelationscore (void) const Check if it is safe to call GetNocorrelationscore method. More...
void ResetNocorrelationscore (void) Reset Nocorrelationscore data member. More...
TNocorrelationscore GetNocorrelationscore (void) const Get the Nocorrelationscore member data. More...
void SetNocorrelationscore (TNocorrelationscore value) Assign a value to Nocorrelationscore data member. More...
TNocorrelationscore & SetNocorrelationscore (void) Assign a value to Nocorrelationscore data member. More...
bool IsSetProbfollowingion (void) const probability of a consecutive ion (used in correlation) Check if a value has been assigned to Probfollowingion data member. More...
bool CanGetProbfollowingion (void) const Check if it is safe to call GetProbfollowingion method. More...
void ResetProbfollowingion (void) Reset Probfollowingion data member. More...
TProbfollowingion GetProbfollowingion (void) const Get the Probfollowingion member data. More...
void SetProbfollowingion (TProbfollowingion value) Assign a value to Probfollowingion data member. More...
TProbfollowingion & SetProbfollowingion (void) Assign a value to Probfollowingion data member. More...
bool IsSetNmethionine (void) const should nmethionine be cleaved? Check if a value has been assigned to Nmethionine data member. More...
bool CanGetNmethionine (void) const Check if it is safe to call GetNmethionine method. More...
void ResetNmethionine (void) Reset Nmethionine data member. More...
TNmethionine GetNmethionine (void) const Get the Nmethionine member data. More...
void SetNmethionine (TNmethionine value) Assign a value to Nmethionine data member. More...
TNmethionine & SetNmethionine (void) Assign a value to Nmethionine data member. More...
bool IsSetAutomassadjust (void) const fraction allowable adjustment of product mass tolerance Check if a value has been assigned to Automassadjust data member. More...
bool CanGetAutomassadjust (void) const Check if it is safe to call GetAutomassadjust method. More...
void ResetAutomassadjust (void) Reset Automassadjust data member. More...
TAutomassadjust GetAutomassadjust (void) const Get the Automassadjust member data. More...
void SetAutomassadjust (TAutomassadjust value) Assign a value to Automassadjust data member. More...
TAutomassadjust & SetAutomassadjust (void) Assign a value to Automassadjust data member. More...
bool IsSetLomasscutoff (void) const low mass filter in Daltons, unscaled Check if a value has been assigned to Lomasscutoff data member. More...
bool CanGetLomasscutoff (void) const Check if it is safe to call GetLomasscutoff method. More...
void ResetLomasscutoff (void) Reset Lomasscutoff data member. More...
TLomasscutoff GetLomasscutoff (void) const Get the Lomasscutoff member data. More...
void SetLomasscutoff (TLomasscutoff value) Assign a value to Lomasscutoff data member. More...
TLomasscutoff & SetLomasscutoff (void) Assign a value to Lomasscutoff data member. More...
bool IsSetLibsearchsettings (void) const library search settings Check if a value has been assigned to Libsearchsettings data member. More...
bool CanGetLibsearchsettings (void) const Check if it is safe to call GetLibsearchsettings method. More...
void ResetLibsearchsettings (void) Reset Libsearchsettings data member. More...
const TLibsearchsettings & GetLibsearchsettings (void) const Get the Libsearchsettings member data. More...
void SetLibsearchsettings (TLibsearchsettings &value) Assign a value to Libsearchsettings data member. More...
TLibsearchsettings & SetLibsearchsettings (void) Assign a value to Libsearchsettings data member. More...
bool IsSetNoprolineions (void) const which ions to use no proline rule Check if a value has been assigned to Noprolineions data member. More...
bool CanGetNoprolineions (void) const Check if it is safe to call GetNoprolineions method. More...
void ResetNoprolineions (void) Reset Noprolineions data member. More...
const TNoprolineions & GetNoprolineions (void) const Get the Noprolineions member data. More...
TNoprolineions & SetNoprolineions (void) Assign a value to Noprolineions data member. More...
bool IsSetReversesearch (void) const do reverse search Check if a value has been assigned to Reversesearch data member. More...
bool CanGetReversesearch (void) const Check if it is safe to call GetReversesearch method. More...
void ResetReversesearch (void) Reset Reversesearch data member. More...
TReversesearch GetReversesearch (void) const Get the Reversesearch member data. More...
void SetReversesearch (TReversesearch value) Assign a value to Reversesearch data member. More...
TReversesearch & SetReversesearch (void) Assign a value to Reversesearch data member. More...
bool IsSetOthersettings (void) const extra search settings Check if a value has been assigned to Othersettings data member. More...
bool CanGetOthersettings (void) const Check if it is safe to call GetOthersettings method. More...
void ResetOthersettings (void) Reset Othersettings data member. More...
const TOthersettings & GetOthersettings (void) const Get the Othersettings member data. More...
TOthersettings & SetOthersettings (void) Assign a value to Othersettings data member. More...
bool IsSetNumisotopes (void) const number of isotopic peaks to search when using MSSearchType multiisotope Check if a value has been assigned to Numisotopes data member. More...
bool CanGetNumisotopes (void) const Check if it is safe to call GetNumisotopes method. More...
void ResetNumisotopes (void) Reset Numisotopes data member. More...
TNumisotopes GetNumisotopes (void) const Get the Numisotopes member data. More...
void SetNumisotopes (TNumisotopes value) Assign a value to Numisotopes data member. More...
TNumisotopes & SetNumisotopes (void) Assign a value to Numisotopes data member. More...
bool IsSetPepppm (void) const search precursor as ppm Check if a value has been assigned to Pepppm data member. More...
bool CanGetPepppm (void) const Check if it is safe to call GetPepppm method. More...
void ResetPepppm (void) Reset Pepppm data member. More...
TPepppm GetPepppm (void) const Get the Pepppm member data. More...
void SetPepppm (TPepppm value) Assign a value to Pepppm data member. More...
TPepppm & SetPepppm (void) Assign a value to Pepppm data member. More...
bool IsSetMsmsppm (void) const search product as ppm Check if a value has been assigned to Msmsppm data member. More...
bool CanGetMsmsppm (void) const Check if it is safe to call GetMsmsppm method. More...
void ResetMsmsppm (void) Reset Msmsppm data member. More...
TMsmsppm GetMsmsppm (void) const Get the Msmsppm member data. More...
void SetMsmsppm (TMsmsppm value) Assign a value to Msmsppm data member. More...
TMsmsppm & SetMsmsppm (void) Assign a value to Msmsppm data member. More...
bool IsSetReportedhitcount (void) const the maximum number of hits to report per spectrum, 0=all Check if a value has been assigned to Reportedhitcount data member. More...
bool CanGetReportedhitcount (void) const Check if it is safe to call GetReportedhitcount method. More...
void ResetReportedhitcount (void) Reset Reportedhitcount data member. More...
TReportedhitcount GetReportedhitcount (void) const Get the Reportedhitcount member data. More...
void SetReportedhitcount (TReportedhitcount value) Assign a value to Reportedhitcount data member. More...
TReportedhitcount & SetReportedhitcount (void) Assign a value to Reportedhitcount data member. More...
virtual void Reset (void) Reset the whole object. More...
CSerialObject (void) virtual ~CSerialObject (void) virtual const CTypeInfo * GetThisTypeInfo (void) const =0 virtual void Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive) Set object to copy of another one. More...
virtual bool Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const Check if both objects contain the same values. More...
virtual void DebugDump (CDebugDumpContext ddc, unsigned int depth) const Define method for dumping debug information. More...
void ThrowUnassigned (TMemberIndex index) const void ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const bool HasNamespaceName (void) const Check if object data type has namespace name. More...
const string & GetNamespaceName (void) const Get namespace name. More...
bool HasNamespacePrefix (void) const Check if data type has namespace prefix. More...
const string & GetNamespacePrefix (void) const Get namespace prefix. More...
CObject (void) Constructor. More...
CObject (const CObject &src) Copy constructor. More...
virtual ~CObject (void) Destructor. More...
CObject & operator= (const CObject &src) THROWS_NONE Assignment operator. More...
bool CanBeDeleted (void) const THROWS_NONE Check if object can be deleted. More...
bool IsAllocatedInPool (void) const THROWS_NONE Check if object is allocated in memory pool (not system heap) More...
bool Referenced (void) const THROWS_NONE Check if object is referenced. More...
bool ReferencedOnlyOnce (void) const THROWS_NONE Check if object is referenced only once. More...
void AddReference (void) const Add reference to object. More...
void RemoveReference (void) const Remove reference to object. More...
void ReleaseReference (void) const Remove reference without deleting object. More...
virtual void DoNotDeleteThisObject (void) Mark this object as not allocated in heap – do not delete this object. More...
virtual void DoDeleteThisObject (void) Mark this object as allocated in heap – object can be deleted. More...
void * operator new (size_t size) Define new operator for memory allocation. More...
void * operator new[] (size_t size) Define new[] operator for 'array' memory allocation. More...
void operator delete (void *ptr) Define delete operator for memory deallocation. More...
void operator delete[] (void *ptr) Define delete[] operator for memory deallocation. More...
void * operator new (size_t size, void *place) Define new operator. More...
void operator delete (void *ptr, void *place) Define delete operator. More...
void * operator new (size_t size, CObjectMemoryPool *place) Define new operator using memory pool. More...
void operator delete (void *ptr, CObjectMemoryPool *place) Define delete operator. More...
CDebugDumpable (void) virtual ~CDebugDumpable (void) void DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const void DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const void DumpToConsole (void) const

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