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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/classCMSRequest__Base.html below:

NCBI C++ ToolKit: CMSRequest_Base Class Reference

  CMSRequest_Base (void)   virtual  ~CMSRequest_Base (void)     DECLARE_INTERNAL_TYPE_INFO ()   bool  IsSetSpectra (void) const   the set of spectra Check if a value has been assigned to Spectra data member. More...
  bool  CanGetSpectra (void) const   Check if it is safe to call GetSpectra method. More...
  void  ResetSpectra (void)   Reset Spectra data member. More...
  const TSpectraGetSpectra (void) const   Get the Spectra member data. More...
  void  SetSpectra (TSpectra &value)   Assign a value to Spectra data member. More...
  TSpectraSetSpectra (void)   Assign a value to Spectra data member. More...
  bool  IsSetSettings (void) const   the search settings Check if a value has been assigned to Settings data member. More...
  bool  CanGetSettings (void) const   Check if it is safe to call GetSettings method. More...
  void  ResetSettings (void)   Reset Settings data member. More...
  const TSettingsGetSettings (void) const   Get the Settings member data. More...
  void  SetSettings (TSettings &value)   Assign a value to Settings data member. More...
  TSettingsSetSettings (void)   Assign a value to Settings data member. More...
  bool  IsSetRid (void) const   request id Check if a value has been assigned to Rid data member. More...
  bool  CanGetRid (void) const   Check if it is safe to call GetRid method. More...
  void  ResetRid (void)   Reset Rid data member. More...
  const TRidGetRid (void) const   Get the Rid member data. More...
  void  SetRid (const TRid &value)   Assign a value to Rid data member. More...
  void  SetRid (TRid &&value)   TRidSetRid (void)   Assign a value to Rid data member. More...
  bool  IsSetMoresettings (void) const   additional search runs Check if a value has been assigned to Moresettings data member. More...
  bool  CanGetMoresettings (void) const   Check if it is safe to call GetMoresettings method. More...
  void  ResetMoresettings (void)   Reset Moresettings data member. More...
  const TMoresettingsGetMoresettings (void) const   Get the Moresettings member data. More...
  void  SetMoresettings (TMoresettings &value)   Assign a value to Moresettings data member. More...
  TMoresettingsSetMoresettings (void)   Assign a value to Moresettings data member. More...
  bool  IsSetModset (void) const   list of mods that can be used in search Check if a value has been assigned to Modset data member. More...
  bool  CanGetModset (void) const   Check if it is safe to call GetModset method. More...
  void  ResetModset (void)   Reset Modset data member. More...
  const TModsetGetModset (void) const   Get the Modset member data. More...
  void  SetModset (TModset &value)   Assign a value to Modset data member. More...
  TModsetSetModset (void)   Assign a value to Modset data member. More...
  virtual void  Reset (void)   Reset the whole object. More...
    CSerialObject (void)   virtual  ~CSerialObject (void)   virtual const CTypeInfoGetThisTypeInfo (void) const =0   virtual void  Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive)   Set object to copy of another one. More...
  virtual bool  Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const   Check if both objects contain the same values. More...
  virtual void  DebugDump (CDebugDumpContext ddc, unsigned int depth) const   Define method for dumping debug information. More...
  void  ThrowUnassigned (TMemberIndex index) const   void  ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const   bool  HasNamespaceName (void) const   Check if object data type has namespace name. More...
  const stringGetNamespaceName (void) const   Get namespace name. More...
  bool  HasNamespacePrefix (void) const   Check if data type has namespace prefix. More...
  const stringGetNamespacePrefix (void) const   Get namespace prefix. More...
    CObject (void)   Constructor. More...
    CObject (const CObject &src)   Copy constructor. More...
  virtual  ~CObject (void)   Destructor. More...
  CObjectoperator= (const CObject &src) THROWS_NONE   Assignment operator. More...
  bool  CanBeDeleted (void) const THROWS_NONE   Check if object can be deleted. More...
  bool  IsAllocatedInPool (void) const THROWS_NONE   Check if object is allocated in memory pool (not system heap) More...
  bool  Referenced (void) const THROWS_NONE   Check if object is referenced. More...
  bool  ReferencedOnlyOnce (void) const THROWS_NONE   Check if object is referenced only once. More...
  void  AddReference (void) const   Add reference to object. More...
  void  RemoveReference (void) const   Remove reference to object. More...
  void  ReleaseReference (void) const   Remove reference without deleting object. More...
  virtual void  DoNotDeleteThisObject (void)   Mark this object as not allocated in heap – do not delete this object. More...
  virtual void  DoDeleteThisObject (void)   Mark this object as allocated in heap – object can be deleted. More...
  void *  operator new (size_t size)   Define new operator for memory allocation. More...
  void *  operator new[] (size_t size)   Define new[] operator for 'array' memory allocation. More...
  void  operator delete (void *ptr)   Define delete operator for memory deallocation. More...
  void  operator delete[] (void *ptr)   Define delete[] operator for memory deallocation. More...
  void *  operator new (size_t size, void *place)   Define new operator. More...
  void  operator delete (void *ptr, void *place)   Define delete operator. More...
  void *  operator new (size_t size, CObjectMemoryPool *place)   Define new operator using memory pool. More...
  void  operator delete (void *ptr, CObjectMemoryPool *place)   Define delete operator. More...
    CDebugDumpable (void)   virtual  ~CDebugDumpable (void)   void  DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const   void  DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const   void  DumpToConsole (void) const  

The search request that is given to the OMSSA algorithm.

CMSRequest_Base

Definition at line 80 of file MSRequest_.hpp.


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