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NCBI C++ ToolKit: CINSDReference_Base Class Reference
Represents ASN.1 type INSDReference defined in file insdseq.asn
Search Toolkit Book for CINSDReference_Base
INSDReference_position contains a string value indicating the basepair span(s) to which a reference applies. More...
#include <objects/insdseq/INSDReference_.hpp>
enum class E_memberIndex {
e__allMandatory = 0 , e_reference , e_position , e_authors ,
e_consortium , e_title , e_journal , e_xref ,
e_pubmed , e_remark
} typedef string TReference typedef string TPosition typedef list< CINSDAuthor > TAuthors typedef string TConsortium typedef string TTitle typedef string TJournal typedef list< CRef< CINSDXref > > TXref typedef int TPubmed typedef string TRemark typedef Tparent::CMemberIndex< E_memberIndex, 10 > TmemberIndex enum EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern } Control filling of newly allocated memory. More...
typedef CObjectCounterLocker TLockerType Default locker type for CRef. More...
typedef atomic< Uint8 > TCounter Counter type is CAtomiCounter. More...
typedef Uint8 TCount Alias for value type of counter. More...
CINSDReference_Base (void) virtual ~CINSDReference_Base (void) DECLARE_INTERNAL_TYPE_INFO () bool IsSetReference (void) const Check if a value has been assigned to Reference data member. More...
bool CanGetReference (void) const Check if it is safe to call GetReference method. More...
void ResetReference (void) Reset Reference data member. More...
const TReference & GetReference (void) const Get the Reference member data. More...
void SetReference (const TReference &value) Assign a value to Reference data member. More...
void SetReference (TReference &&value) TReference & SetReference (void) Assign a value to Reference data member. More...
bool IsSetPosition (void) const Check if a value has been assigned to Position data member. More...
bool CanGetPosition (void) const Check if it is safe to call GetPosition method. More...
void ResetPosition (void) Reset Position data member. More...
const TPosition & GetPosition (void) const Get the Position member data. More...
void SetPosition (const TPosition &value) Assign a value to Position data member. More...
void SetPosition (TPosition &&value) TPosition & SetPosition (void) Assign a value to Position data member. More...
bool IsSetAuthors (void) const Check if a value has been assigned to Authors data member. More...
bool CanGetAuthors (void) const Check if it is safe to call GetAuthors method. More...
void ResetAuthors (void) Reset Authors data member. More...
const TAuthors & GetAuthors (void) const Get the Authors member data. More...
TAuthors & SetAuthors (void) Assign a value to Authors data member. More...
bool IsSetConsortium (void) const Check if a value has been assigned to Consortium data member. More...
bool CanGetConsortium (void) const Check if it is safe to call GetConsortium method. More...
void ResetConsortium (void) Reset Consortium data member. More...
const TConsortium & GetConsortium (void) const Get the Consortium member data. More...
void SetConsortium (const TConsortium &value) Assign a value to Consortium data member. More...
void SetConsortium (TConsortium &&value) TConsortium & SetConsortium (void) Assign a value to Consortium data member. More...
bool IsSetTitle (void) const Check if a value has been assigned to Title data member. More...
bool CanGetTitle (void) const Check if it is safe to call GetTitle method. More...
void ResetTitle (void) Reset Title data member. More...
const TTitle & GetTitle (void) const Get the Title member data. More...
void SetTitle (const TTitle &value) Assign a value to Title data member. More...
void SetTitle (TTitle &&value) TTitle & SetTitle (void) Assign a value to Title data member. More...
bool IsSetJournal (void) const Check if a value has been assigned to Journal data member. More...
bool CanGetJournal (void) const Check if it is safe to call GetJournal method. More...
void ResetJournal (void) Reset Journal data member. More...
const TJournal & GetJournal (void) const Get the Journal member data. More...
void SetJournal (const TJournal &value) Assign a value to Journal data member. More...
void SetJournal (TJournal &&value) TJournal & SetJournal (void) Assign a value to Journal data member. More...
bool IsSetXref (void) const Check if a value has been assigned to Xref data member. More...
bool CanGetXref (void) const Check if it is safe to call GetXref method. More...
void ResetXref (void) Reset Xref data member. More...
const TXref & GetXref (void) const Get the Xref member data. More...
TXref & SetXref (void) Assign a value to Xref data member. More...
bool IsSetPubmed (void) const Check if a value has been assigned to Pubmed data member. More...
bool CanGetPubmed (void) const Check if it is safe to call GetPubmed method. More...
void ResetPubmed (void) Reset Pubmed data member. More...
TPubmed GetPubmed (void) const Get the Pubmed member data. More...
void SetPubmed (TPubmed value) Assign a value to Pubmed data member. More...
TPubmed & SetPubmed (void) Assign a value to Pubmed data member. More...
bool IsSetRemark (void) const Check if a value has been assigned to Remark data member. More...
bool CanGetRemark (void) const Check if it is safe to call GetRemark method. More...
void ResetRemark (void) Reset Remark data member. More...
const TRemark & GetRemark (void) const Get the Remark member data. More...
void SetRemark (const TRemark &value) Assign a value to Remark data member. More...
void SetRemark (TRemark &&value) TRemark & SetRemark (void) Assign a value to Remark data member. More...
virtual void Reset (void) Reset the whole object. More...
CSerialObject (void) virtual ~CSerialObject (void) virtual const CTypeInfo * GetThisTypeInfo (void) const =0 virtual void Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive) Set object to copy of another one. More...
virtual bool Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const Check if both objects contain the same values. More...
virtual void DebugDump (CDebugDumpContext ddc, unsigned int depth) const Define method for dumping debug information. More...
void ThrowUnassigned (TMemberIndex index) const void ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const bool HasNamespaceName (void) const Check if object data type has namespace name. More...
const string & GetNamespaceName (void) const Get namespace name. More...
bool HasNamespacePrefix (void) const Check if data type has namespace prefix. More...
const string & GetNamespacePrefix (void) const Get namespace prefix. More...
CObject (void) Constructor. More...
CObject (const CObject &src) Copy constructor. More...
virtual ~CObject (void) Destructor. More...
CObject & operator= (const CObject &src) THROWS_NONE Assignment operator. More...
bool CanBeDeleted (void) const THROWS_NONE Check if object can be deleted. More...
bool IsAllocatedInPool (void) const THROWS_NONE Check if object is allocated in memory pool (not system heap) More...
bool Referenced (void) const THROWS_NONE Check if object is referenced. More...
bool ReferencedOnlyOnce (void) const THROWS_NONE Check if object is referenced only once. More...
void AddReference (void) const Add reference to object. More...
void RemoveReference (void) const Remove reference to object. More...
void ReleaseReference (void) const Remove reference without deleting object. More...
virtual void DoNotDeleteThisObject (void) Mark this object as not allocated in heap – do not delete this object. More...
virtual void DoDeleteThisObject (void) Mark this object as allocated in heap – object can be deleted. More...
void * operator new (size_t size) Define new operator for memory allocation. More...
void * operator new[] (size_t size) Define new[] operator for 'array' memory allocation. More...
void operator delete (void *ptr) Define delete operator for memory deallocation. More...
void operator delete[] (void *ptr) Define delete[] operator for memory deallocation. More...
void * operator new (size_t size, void *place) Define new operator. More...
void operator delete (void *ptr, void *place) Define delete operator. More...
void * operator new (size_t size, CObjectMemoryPool *place) Define new operator using memory pool. More...
void operator delete (void *ptr, CObjectMemoryPool *place) Define delete operator. More...
CDebugDumpable (void) virtual ~CDebugDumpable (void) void DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const void DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const void DumpToConsole (void) const
INSDReference_position contains a string value indicating the basepair span(s) to which a reference applies.
The allowable formats are:
X..Y : Where X and Y are integers separated by two periods, X >= 1 , Y <= sequence length, and X <= Y
Multiple basepair spans can exist, separated by a semi-colon and a space. For example : 10..20; 100..500
sites : The string literal 'sites', indicating that a reference provides sequence annotation information, but the specific basepair spans are either not captured, or were too numerous to record.
The 'sites' literal string is singly occuring, and cannot be used in conjunction with any X..Y basepair spans.
'sites' is a convention utilized by GenBank, and might not be presented in XML provided by EMBL and DDBJ.
References that lack an INSDReference_position element are not attributed to any particular region of the sequence.
CINSDReference_Base –
Definition at line 101 of file INSDReference_.hpp.
The documentation for this class was generated from the following files:
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