Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/classCGC__AssemblyUnit__Base.html below:
NCBI C++ ToolKit: CGC_AssemblyUnit_Base Class Reference
CGC_AssemblyUnit_Base (void) virtual ~CGC_AssemblyUnit_Base (void) DECLARE_INTERNAL_TYPE_INFO () bool IsSetId (void) const The identifier of this assembly Contains: GenColl internal id, GenColl accession.version, AGP id, UCSC name, Ensembl name Types of DbTags used: db "GenColl", tag id <assembly-release-id> db "GenColl", tag str <assembly-accession.version> db "AGP", tag id <agp-sumbission-id> db "GenColl_Chain", tag id <assembly-chain-id> "Ensembl_name" and "UCSC_name" will not appear in the Unit level since these organizations do not define assembly-units. More...
bool CanGetId (void) const Check if it is safe to call GetId method. More...
void ResetId (void) Reset Id data member. More...
const TId & GetId (void) const Get the Id member data. More...
TId & SetId (void) Assign a value to Id data member. More...
bool IsSetClass (void) const Check if a value has been assigned to Class data member. More...
bool CanGetClass (void) const Check if it is safe to call GetClass method. More...
void ResetClass (void) Reset Class data member. More...
TClass GetClass (void) const Get the Class member data. More...
void SetClass (TClass value) Assign a value to Class data member. More...
TClass & SetClass (void) Assign a value to Class data member. More...
bool IsSetDesc (void) const descriptors live in a shared data block Check if a value has been assigned to Desc data member. More...
bool CanGetDesc (void) const Check if it is safe to call GetDesc method. More...
void ResetDesc (void) Reset Desc data member. More...
const TDesc & GetDesc (void) const Get the Desc member data. More...
void SetDesc (TDesc &value) Assign a value to Desc data member. More...
TDesc & SetDesc (void) Assign a value to Desc data member. More...
bool IsSetMols (void) const collections of molecules for this assembly Check if a value has been assigned to Mols data member. More...
bool CanGetMols (void) const Check if it is safe to call GetMols method. More...
void ResetMols (void) Reset Mols data member. More...
const TMols & GetMols (void) const Get the Mols member data. More...
TMols & SetMols (void) Assign a value to Mols data member. More...
bool IsSetOther_sequences (void) const On primary assembly-unit: here will be the unplaced sequences On alt-loci: list of sequences aligned/unaligned to primary unit Check if a value has been assigned to Other_sequences data member. More...
bool CanGetOther_sequences (void) const Check if it is safe to call GetOther_sequences method. More...
void ResetOther_sequences (void) Reset Other_sequences data member. More...
const TOther_sequences & GetOther_sequences (void) const Get the Other_sequences member data. More...
TOther_sequences & SetOther_sequences (void) Assign a value to Other_sequences data member. More...
bool IsSetStats (void) const statistics "stats" field holds stats for all chromosomes combined: ordered/unordered scaffolds "unplaced-stats" holds stats for ChrUn which is omitted from "stats" Check if a value has been assigned to Stats data member. More...
bool CanGetStats (void) const Check if it is safe to call GetStats method. More...
void ResetStats (void) Reset Stats data member. More...
const TStats & GetStats (void) const Get the Stats member data. More...
void SetStats (TStats &value) Assign a value to Stats data member. More...
TStats & SetStats (void) Assign a value to Stats data member. More...
bool IsSetUnplaced_stats (void) const Check if a value has been assigned to Unplaced_stats data member. More...
bool CanGetUnplaced_stats (void) const Check if it is safe to call GetUnplaced_stats method. More...
void ResetUnplaced_stats (void) Reset Unplaced_stats data member. More...
const TUnplaced_stats & GetUnplaced_stats (void) const Get the Unplaced_stats member data. More...
TUnplaced_stats & SetUnplaced_stats (void) Assign a value to Unplaced_stats data member. More...
bool IsSetUnplaced_unlocalized_stats (void) const Check if a value has been assigned to Unplaced_unlocalized_stats data member. More...
bool CanGetUnplaced_unlocalized_stats (void) const Check if it is safe to call GetUnplaced_unlocalized_stats method. More...
void ResetUnplaced_unlocalized_stats (void) Reset Unplaced_unlocalized_stats data member. More...
const TUnplaced_unlocalized_stats & GetUnplaced_unlocalized_stats (void) const Get the Unplaced_unlocalized_stats member data. More...
TUnplaced_unlocalized_stats & SetUnplaced_unlocalized_stats (void) Assign a value to Unplaced_unlocalized_stats data member. More...
virtual void Reset (void) Reset the whole object. More...
CSerialObject (void) virtual ~CSerialObject (void) virtual const CTypeInfo * GetThisTypeInfo (void) const =0 virtual void Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive) Set object to copy of another one. More...
virtual bool Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const Check if both objects contain the same values. More...
virtual void DebugDump (CDebugDumpContext ddc, unsigned int depth) const Define method for dumping debug information. More...
void ThrowUnassigned (TMemberIndex index) const void ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const bool HasNamespaceName (void) const Check if object data type has namespace name. More...
const string & GetNamespaceName (void) const Get namespace name. More...
bool HasNamespacePrefix (void) const Check if data type has namespace prefix. More...
const string & GetNamespacePrefix (void) const Get namespace prefix. More...
CObject (void) Constructor. More...
CObject (const CObject &src) Copy constructor. More...
virtual ~CObject (void) Destructor. More...
CObject & operator= (const CObject &src) THROWS_NONE Assignment operator. More...
bool CanBeDeleted (void) const THROWS_NONE Check if object can be deleted. More...
bool IsAllocatedInPool (void) const THROWS_NONE Check if object is allocated in memory pool (not system heap) More...
bool Referenced (void) const THROWS_NONE Check if object is referenced. More...
bool ReferencedOnlyOnce (void) const THROWS_NONE Check if object is referenced only once. More...
void AddReference (void) const Add reference to object. More...
void RemoveReference (void) const Remove reference to object. More...
void ReleaseReference (void) const Remove reference without deleting object. More...
virtual void DoNotDeleteThisObject (void) Mark this object as not allocated in heap – do not delete this object. More...
virtual void DoDeleteThisObject (void) Mark this object as allocated in heap – object can be deleted. More...
void * operator new (size_t size) Define new operator for memory allocation. More...
void * operator new[] (size_t size) Define new[] operator for 'array' memory allocation. More...
void operator delete (void *ptr) Define delete operator for memory deallocation. More...
void operator delete[] (void *ptr) Define delete[] operator for memory deallocation. More...
void * operator new (size_t size, void *place) Define new operator. More...
void operator delete (void *ptr, void *place) Define delete operator. More...
void * operator new (size_t size, CObjectMemoryPool *place) Define new operator using memory pool. More...
void operator delete (void *ptr, CObjectMemoryPool *place) Define delete operator. More...
CDebugDumpable (void) virtual ~CDebugDumpable (void) void DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const void DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const void DumpToConsole (void) const
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