RetroSearch Browse

Home - News ( United States | United Kingdom | Italy | Germany ) - Football scores

Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/classCFeatureSeqTableColumnBase.html below:

NCBI C++ ToolKit: CFeatureSeqTableColumnBase Class Reference

Search Toolkit Book for CFeatureSeqTableColumnBase

#include <gui/packages/pkg_sequence_edit/featedit_util.hpp>

CFeatureSeqTableColumnBase () virtual bool AddToFeature (objects::CSeq_feat &in_out_feat, const string &newValue, objects::edit::EExistingText existing_text) virtual void ClearInFeature (objects::CSeq_feat &in_out_feat) virtual string GetFromFeat (const objects::CSeq_feat &in_out_feat) virtual string GetLabel () const virtual bool RelaxedMatch (const objects::CSeq_feat &f1, const objects::CSeq_feat &f2) const virtual vector< string > IsValid (const vector< string > &values) virtual vector< CConstRef< CObject > > GetObjects (objects::CBioseq_Handle bsh) virtual vector< CRef< objects::edit::CApplyObject > > GetApplyObjects (objects::CBioseq_Handle bsh) void SetSubtype (objects::CSeqFeatData::ESubtype subtype) objects::CSeqFeatData::ESubtype GetSubtype () void SetMajorType (objects::CSeqFeatData::E_Choice major_type) objects::CSeqFeatData::E_Choice GetMajorType () virtual vector< string > GetVals (const objects::CSeq_feat &feat) virtual vector< CRef< objects::edit::CApplyObject > > GetRelatedGeneApplyObjects (objects::CBioseq_Handle bsh) void SetScope (CRef< CScope > scope) virtual bool AllowMultipleValues () CObject (void) Constructor. More...
CObject (const CObject &src) Copy constructor. More...
virtual ~CObject (void) Destructor. More...
CObject & operator= (const CObject &src) THROWS_NONE Assignment operator. More...
bool CanBeDeleted (void) const THROWS_NONE Check if object can be deleted. More...
bool IsAllocatedInPool (void) const THROWS_NONE Check if object is allocated in memory pool (not system heap) More...
bool Referenced (void) const THROWS_NONE Check if object is referenced. More...
bool ReferencedOnlyOnce (void) const THROWS_NONE Check if object is referenced only once. More...
void AddReference (void) const Add reference to object. More...
void RemoveReference (void) const Remove reference to object. More...
void ReleaseReference (void) const Remove reference without deleting object. More...
virtual void DoNotDeleteThisObject (void) Mark this object as not allocated in heap – do not delete this object. More...
virtual void DoDeleteThisObject (void) Mark this object as allocated in heap – object can be deleted. More...
void * operator new (size_t size) Define new operator for memory allocation. More...
void * operator new[] (size_t size) Define new[] operator for 'array' memory allocation. More...
void operator delete (void *ptr) Define delete operator for memory deallocation. More...
void operator delete[] (void *ptr) Define delete[] operator for memory deallocation. More...
void * operator new (size_t size, void *place) Define new operator. More...
void operator delete (void *ptr, void *place) Define delete operator. More...
void * operator new (size_t size, CObjectMemoryPool *place) Define new operator using memory pool. More...
void operator delete (void *ptr, CObjectMemoryPool *place) Define delete operator. More...
virtual void DebugDump (CDebugDumpContext ddc, unsigned int depth) const Define method for dumping debug information. More...
CDebugDumpable (void) virtual ~CDebugDumpable (void) void DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const void DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const void DumpToConsole (void) const

Definition at line 60 of file featedit_util.hpp.

◆ CFeatureSeqTableColumnBase() CFeatureSeqTableColumnBase::CFeatureSeqTableColumnBase ( ) inline

Definition at line 63 of file featedit_util.hpp.

◆ AddToFeature()

Reimplemented in CNcrnaClassColumn, CProtRefColumn, CGeneRefColumn, CDescriptionColumn, CGeneticCodeColumn, CCodonStartColumn, CProductColumn, CSatelliteTypeNameColumn, CSatelliteColumn, CGbQualColumn, CExceptionColumn, CCommentColumn, CPartialStopColumn, and CPartialStartColumn.

Definition at line 69 of file featedit_util.hpp.

◆ AllowMultipleValues() virtual bool CFeatureSeqTableColumnBase::AllowMultipleValues ( ) inlinevirtual ◆ ClearInFeature() virtual void CFeatureSeqTableColumnBase::ClearInFeature ( objects::CSeq_feat & in_out_feat ) inlinevirtual

Reimplemented in CDbXrefColumn, CNcrnaClassColumn, CProtRefColumn, CGeneRefColumn, CDescriptionColumn, CGeneticCodeColumn, CCodonStartColumn, CProductColumn, CSatelliteTypeNameColumn, CSatelliteColumn, CGbQualColumn, CExceptionColumn, CCommentColumn, CPartialStopColumn, and CPartialStartColumn.

Definition at line 70 of file featedit_util.hpp.

Referenced by CMiscSeqTableColumn::ClearVal(), CBulkCDS::GetCommandFromValuesTable(), CBulkGene::GetCommandFromValuesTable(), CBulkMiscFeat::GetCommandFromValuesTable(), and CBulkRna::GetCommandFromValuesTable().

◆ GetApplyObjects() vector< CRef< CApplyObject > > CFeatureSeqTableColumnBase::GetApplyObjects ( objects::CBioseq_Handle bsh ) virtual

Reimplemented in CGeneRefColumn, CCodonStartColumn, and CProductColumn.

Definition at line 124 of file featedit_util.cpp.

References CSeqFeatData_Base::e_not_set, CSeqFeatData::eSubtype_bad, f, GetObjects(), GetRelatedGeneApplyObjects(), ITERATE, m_MajorType, and m_Subtype.

Referenced by CCodonStartColumn::GetApplyObjects(), and CGeneRefColumn::GetApplyObjects().

◆ GetFromFeat() virtual string CFeatureSeqTableColumnBase::GetFromFeat ( const objects::CSeq_feat & in_out_feat ) inlinevirtual

Reimplemented in CCitationColumn, CTagPeptideColumn, CAntiCodonColumn, CCodonsRecColumn, CLocationColumn, CRegionColumn, CEvidenceColumn, CDbXrefColumn, CNcrnaClassColumn, CProtRefColumn, CGeneRefColumn, CDescriptionColumn, CGeneticCodeColumn, CCodonStartColumn, CProductColumn, CSatelliteTypeNameColumn, CSatelliteColumn, CGbQualColumn, CExceptionColumn, CCommentColumn, CPartialStopColumn, and CPartialStartColumn.

Definition at line 71 of file featedit_util.hpp.

Referenced by CBulkCDS::GetCommandFromValuesTable(), CBulkGene::GetCommandFromValuesTable(), CBulkMiscFeat::GetCommandFromValuesTable(), CBulkRna::GetCommandFromValuesTable(), CMiscSeqTableColumn::GetVal(), CMiscSeqTableColumn::GetVals(), CBulkCDS::GetValuesTableFromSeqEntry(), CBulkGene::GetValuesTableFromSeqEntry(), CBulkMiscFeat::GetValuesTableFromSeqEntry(), and CBulkRna::GetValuesTableFromSeqEntry().

◆ GetLabel() virtual string CFeatureSeqTableColumnBase::GetLabel ( void ) const inlinevirtual

Reimplemented in CDescriptionColumn, CGeneticCodeColumn, CCodonStartColumn, CProductColumn, CSatelliteTypeNameColumn, CSatelliteColumn, CRptUnitRangeColumn, CGbQualColumn, CExceptionColumn, CCommentColumn, CPartialStopColumn, and CPartialStartColumn.

Definition at line 72 of file featedit_util.hpp.

Referenced by CMiscSeqTableColumn::IsProductField().

◆ GetMajorType() objects::CSeqFeatData::E_Choice CFeatureSeqTableColumnBase::GetMajorType ( ) inline ◆ GetObjects() vector< CConstRef< CObject > > CFeatureSeqTableColumnBase::GetObjects ( objects::CBioseq_Handle bsh ) virtual

Definition at line 76 of file featedit_util.cpp.

References CSeqFeatData_Base::e_Cdregion, CSeqFeatData_Base::e_not_set, CSeqFeatData_Base::e_Prot, f, CScope::GetBioseqHandle(), CSeq_feat_Handle::GetOriginalSeq_feat(), CBioseq_Handle::GetScope(), CSeqFeatData::GetTypeFromSubtype(), CBioseq_Handle::IsAa(), m_MajorType, m_Subtype, and CConstRef< C, Locker >::Reset().

Referenced by GetApplyObjects(), CProductColumn::GetApplyObjects(), CMiscSeqTableColumn::GetApplyObjectsValues(), and GetRelatedGeneApplyObjects().

◆ GetRelatedGeneApplyObjects() vector< CRef< CApplyObject > > CFeatureSeqTableColumnBase::GetRelatedGeneApplyObjects ( objects::CBioseq_Handle bsh ) virtual

Definition at line 142 of file featedit_util.cpp.

References f, CSeq_loc::fMerge_SingleRange, GetGeneForFeature(), GetObjects(), CRef< C, Locker >::GetPointer(), CBioseq_Handle::GetScope(), CBioseq_Handle::GetSeq_entry_Handle(), ITERATE, NULL, CSeq_feat_Base::SetData(), and CSeq_feat_Base::SetLocation().

Referenced by GetApplyObjects(), and CGeneRefColumn::GetApplyObjects().

◆ GetSubtype() objects::CSeqFeatData::ESubtype CFeatureSeqTableColumnBase::GetSubtype ( void ) inline ◆ GetVals() virtual vector<string> CFeatureSeqTableColumnBase::GetVals ( const objects::CSeq_feat & feat ) inlinevirtual

Definition at line 81 of file featedit_util.hpp.

◆ IsValid() virtual vector<string> CFeatureSeqTableColumnBase::IsValid ( const vector< string > & values ) inlinevirtual ◆ RelaxedMatch() virtual bool CFeatureSeqTableColumnBase::RelaxedMatch ( const objects::CSeq_feat & f1, const objects::CSeq_feat & f2 ) const inlinevirtual ◆ SetMajorType() void CFeatureSeqTableColumnBase::SetMajorType ( objects::CSeqFeatData::E_Choice major_type ) inline ◆ SetScope() void CFeatureSeqTableColumnBase::SetScope ( CRef< CScope > scope ) inline ◆ SetSubtype() void CFeatureSeqTableColumnBase::SetSubtype ( objects::CSeqFeatData::ESubtype subtype ) inline ◆ m_MajorType objects::CSeqFeatData::E_Choice CFeatureSeqTableColumnBase::m_MajorType protected ◆ m_Scope ◆ m_Subtype objects::CSeqFeatData::ESubtype CFeatureSeqTableColumnBase::m_Subtype protected

The documentation for this class was generated from the following files:

include/gui/packages/pkg_sequence_edit/featedit_util.hpp
src/gui/packages/pkg_sequence_edit/featedit_util.cpp

RetroSearch is an open source project built by @garambo | Open a GitHub Issue

Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo

HTML: 3.2 | Encoding: UTF-8 | Version: 0.7.4