Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/classCConvertProtToProt.html below:
NCBI C++ ToolKit: CConvertProtToProt Class Reference
Search Toolkit Book for CConvertProtToProt
#include <gui/objutils/convert_feat.hpp>
CConvertProtToProt (objects::CSeqFeatData::ESubtype feat_to, objects::CSeqFeatData::ESubtype feat_from) virtual string GetDescription () virtual bool CanConvertTo (objects::CSeqFeatData::ESubtype subtype) virtual bool CanConvertFrom (objects::CSeqFeatData::ESubtype subtype) CConvertFeatureBase (objects::CSeqFeatData::ESubtype feat_to=objects::CSeqFeatData::eSubtype_bad, objects::CSeqFeatData::ESubtype feat_from=objects::CSeqFeatData::eSubtype_bad) ~CConvertFeatureBase () virtual CRef< CCmdComposite > Convert (const objects::CSeq_feat &orig, bool keep_orig, objects::CScope &scope) TOptions & SetOptions () const TOptions & GetOptions () const CRef< CConversionOption > FindRemoveTranscriptId () string x_GetCDSProduct (const objects::CSeq_feat &orig, objects::CScope &scope) void SetCreateGeneralOnly (bool flag) void SetOffset (int *offset) CObject (void) Constructor. More...
CObject (const CObject &src) Copy constructor. More...
virtual ~CObject (void) Destructor. More...
CObject & operator= (const CObject &src) THROWS_NONE Assignment operator. More...
bool CanBeDeleted (void) const THROWS_NONE Check if object can be deleted. More...
bool IsAllocatedInPool (void) const THROWS_NONE Check if object is allocated in memory pool (not system heap) More...
bool Referenced (void) const THROWS_NONE Check if object is referenced. More...
bool ReferencedOnlyOnce (void) const THROWS_NONE Check if object is referenced only once. More...
void AddReference (void) const Add reference to object. More...
void RemoveReference (void) const Remove reference to object. More...
void ReleaseReference (void) const Remove reference without deleting object. More...
virtual void DoNotDeleteThisObject (void) Mark this object as not allocated in heap – do not delete this object. More...
virtual void DoDeleteThisObject (void) Mark this object as allocated in heap – object can be deleted. More...
void * operator new (size_t size) Define new operator for memory allocation. More...
void * operator new[] (size_t size) Define new[] operator for 'array' memory allocation. More...
void operator delete (void *ptr) Define delete operator for memory deallocation. More...
void operator delete[] (void *ptr) Define delete[] operator for memory deallocation. More...
void * operator new (size_t size, void *place) Define new operator. More...
void operator delete (void *ptr, void *place) Define delete operator. More...
void * operator new (size_t size, CObjectMemoryPool *place) Define new operator using memory pool. More...
void operator delete (void *ptr, CObjectMemoryPool *place) Define delete operator. More...
virtual void DebugDump (CDebugDumpContext ddc, unsigned int depth) const Define method for dumping debug information. More...
CDebugDumpable (void) virtual ~CDebugDumpable (void) void DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const void DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const void DumpToConsole (void) const typedef vector< CRef< CConversionOption > > TOptions enum EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern } Control filling of newly allocated memory. More...
typedef CObjectCounterLocker TLockerType Default locker type for CRef. More...
typedef atomic< Uint8 > TCounter Counter type is CAtomiCounter. More...
typedef Uint8 TCount Alias for value type of counter. More...
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (void) Define method to throw null pointer exception. More...
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (const type_info &type) static EAllocFillMode GetAllocFillMode (void) static void SetAllocFillMode (EAllocFillMode mode) static void SetAllocFillMode (const string &value) Set mode from configuration parameter value. More...
static void EnableDebugDump (bool on) static const string s_RemovemRNA static const string s_RemoveGene static const string s_RemoveTranscriptID static const string s_NcrnaClass static const string s_SiteType static const string s_BondType static const string s_PlaceOnProt static const string s_IsPseudo static const TCount eCounterBitsCanBeDeleted = 1 << 0 Define possible object states. More...
static const TCount eCounterBitsInPlainHeap = 1 << 1 Heap signature was found. More...
static const TCount eCounterBitsPlaceMask Mask for 'in heap' state flags. More...
static const int eCounterStep = 1 << 2 Skip over the "in heap" bits. More...
static const TCount eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2) Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...
static const TCount eCounterStateMask Valid object, and object in heap. More...
CRef< CCmdComposite > x_SimpleConversion (const objects::CSeq_feat &orig, CRef< objects::CSeq_feat > new_feat, bool keep_orig, objects::CScope &scope) CRef< CCmdComposite > x_ConvertToCDS (const objects::CSeq_feat &orig, CRef< objects::CSeq_feat > new_feat, bool keep_orig, objects::CScope &scope, vector< string > product) bool x_MoveFeatureToProtein (const objects::CSeq_feat &orig, CRef< objects::CSeq_feat > new_feat, bool keep_orig, objects::CScope &scope) vector< string > x_ExtractQuals (CRef< objects::CSeq_feat > new_feat, string qual_name) vector< string > x_ExtractProductQuals (CRef< objects::CSeq_feat > new_feat) void x_AddToComment (string comment, CRef< objects::CSeq_feat > new_feat, objects::edit::EExistingText existing_text=objects::edit::eExistingText_prefix_semi) void x_ClearGenericFields (CRef< objects::CSeq_feat > new_feat) void x_AddCDSSourceConversionOptions () void x_AddCDSDestinationConversionOptions () void x_AddRnaDestinationConversionOptions () void x_AddSiteDestinationConversionOptions () void x_AddBondDestinationConversionOptions () void x_AddRegionDestionationConversionOptions () CRef< CConversionOption > x_FindOption (const string &label) CRef< CConversionOption > x_FindRemoveGene () CRef< CConversionOption > x_FindRemovemRNA () CRef< CConversionOption > x_FindNcrnaClass () CRef< CConversionOption > x_FindSiteType () CRef< CConversionOption > x_FindBondType () CRef< CConversionOption > x_FindPlaceOnProt () CRef< CConversionOption > x_FindPseudo () bool x_IsImportSubtype (objects::CSeqFeatData::ESubtype subtype) bool x_IsProtSubtype (objects::CSeqFeatData::ESubtype subtype) bool x_IsRnaSubtype (objects::CSeqFeatData::ESubtype subtype) string GetSiteName (objects::CSeqFeatData::TSite site_type) virtual void DeleteThis (void) Virtual method "deleting" this object. More...
objects::CSeqFeatData::ESubtype m_To objects::CSeqFeatData::ESubtype m_From TOptions m_Options objects::CSiteList m_SiteList objects::CBondList m_BondList bool m_create_general_only = false int * m_offset = nullptr
Definition at line 452 of file convert_feat.hpp.
◆ CConvertProtToProt() CConvertProtToProt::CConvertProtToProt ( objects::CSeqFeatData::ESubtype feat_to, objects::CSeqFeatData::ESubtype feat_from ) inline
Definition at line 455 of file convert_feat.hpp.
◆ CanConvertFrom() virtual bool CConvertProtToProt::CanConvertFrom ( objects::CSeqFeatData::ESubtype subtype ) inlinevirtual ◆ CanConvertTo() virtual bool CConvertProtToProt::CanConvertTo ( objects::CSeqFeatData::ESubtype subtype ) inlinevirtual ◆ GetDescription() virtual string CConvertProtToProt::GetDescription ( void ) inlinevirtual
The documentation for this class was generated from the following file:
RetroSearch is an open source project built by @garambo
| Open a GitHub Issue
Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo
HTML:
3.2
| Encoding:
UTF-8
| Version:
0.7.4