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NCBI C++ ToolKit: CBlastQueryVector Class Reference
void AddQuery (CRef< CBlastSearchQuery > q) Add a query to the set. More...
bool Empty () const Returns true if this query vector is empty. More...
size_type Size () const Returns the number of queries found in this query vector. More...
CConstRef< objects::CSeq_loc > GetQuerySeqLoc (size_type i) const Get the query Seq-loc for a query by index. More...
CRef< objects::CScope > GetScope (size_type i) const Get the scope containing a query by index. More...
TMaskedQueryRegions GetMaskedRegions (size_type i) const Get the masked regions for a query by number. More...
CRef< objects::CSeq_loc > GetMasks (size_type i) const Convenience method to get a CSeq_loc representing the masking locations. More...
void SetMaskedRegions (size_type i, TMaskedQueryRegions mqr) Assign a list of masked regions to one query. More...
void AddMask (size_type i, CRef< CSeqLocInfo > sli) Add a masked region to the set for a query. More...
CRef< CBlastSearchQuery > GetBlastSearchQuery (size_type i) const Get the CBlastSearchQuery object at index i. More...
CRef< CBlastSearchQuery > operator[] (size_type i) const Get the CBlastSearchQuery object at index i. More...
size_type size () const Identical to Size, provided to facilitate STL-style iteration. More...
const_iterator begin () const Returns const_iterator to beginning of container, provided to facilitate STL-style iteration. More...
const_iterator end () const Returns const_iterator to end of container, provided to facilitate STL-style iteration. More...
void clear () Clears the contents of this object. More...
void push_back (const value_type &element) Add a value to the back of this container. More...
CObject (void) Constructor. More...
CObject (const CObject &src) Copy constructor. More...
virtual ~CObject (void) Destructor. More...
CObject & operator= (const CObject &src) THROWS_NONE Assignment operator. More...
bool CanBeDeleted (void) const THROWS_NONE Check if object can be deleted. More...
bool IsAllocatedInPool (void) const THROWS_NONE Check if object is allocated in memory pool (not system heap) More...
bool Referenced (void) const THROWS_NONE Check if object is referenced. More...
bool ReferencedOnlyOnce (void) const THROWS_NONE Check if object is referenced only once. More...
void AddReference (void) const Add reference to object. More...
void RemoveReference (void) const Remove reference to object. More...
void ReleaseReference (void) const Remove reference without deleting object. More...
virtual void DoNotDeleteThisObject (void) Mark this object as not allocated in heap – do not delete this object. More...
virtual void DoDeleteThisObject (void) Mark this object as allocated in heap – object can be deleted. More...
void * operator new (size_t size) Define new operator for memory allocation. More...
void * operator new[] (size_t size) Define new[] operator for 'array' memory allocation. More...
void operator delete (void *ptr) Define delete operator for memory deallocation. More...
void operator delete[] (void *ptr) Define delete[] operator for memory deallocation. More...
void * operator new (size_t size, void *place) Define new operator. More...
void operator delete (void *ptr, void *place) Define delete operator. More...
void * operator new (size_t size, CObjectMemoryPool *place) Define new operator using memory pool. More...
void operator delete (void *ptr, CObjectMemoryPool *place) Define delete operator. More...
virtual void DebugDump (CDebugDumpContext ddc, unsigned int depth) const Define method for dumping debug information. More...
CDebugDumpable (void) virtual ~CDebugDumpable (void) void DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const void DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const void DumpToConsole (void) const
Query Vector.
This class represents the data relevant to all queries in a blast search. The queries are represented as CBlastSearchQuery objects. Each contains a Seq-loc, scope, and a list of filtered regions.
Definition at line 276 of file sseqloc.hpp.
RetroSearch is an open source project built by @garambo
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