Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/classCBlast4__simple__alignment__Base.html below:
NCBI C++ ToolKit: CBlast4_simple_alignment_Base Class Reference
CBlast4_simple_alignment_Base (void) virtual ~CBlast4_simple_alignment_Base (void) DECLARE_INTERNAL_TYPE_INFO () bool IsSetSubject_id (void) const Subject sequence identifier (normally a GI from the SeqAlign) Check if a value has been assigned to Subject_id data member. More...
bool CanGetSubject_id (void) const Check if it is safe to call GetSubject_id method. More...
void ResetSubject_id (void) Reset Subject_id data member. More...
const TSubject_id & GetSubject_id (void) const Get the Subject_id member data. More...
void SetSubject_id (const TSubject_id &value) Assign a value to Subject_id data member. More...
void SetSubject_id (TSubject_id &&value) TSubject_id & SetSubject_id (void) Assign a value to Subject_id data member. More...
bool IsSetE_value (void) const E-Value Check if a value has been assigned to E_value data member. More...
bool CanGetE_value (void) const Check if it is safe to call GetE_value method. More...
void ResetE_value (void) Reset E_value data member. More...
TE_value GetE_value (void) const Get the E_value member data. More...
void SetE_value (TE_value value) Assign a value to E_value data member. More...
TE_value & SetE_value (void) Assign a value to E_value data member. More...
bool IsSetBit_score (void) const Bit score Check if a value has been assigned to Bit_score data member. More...
bool CanGetBit_score (void) const Check if it is safe to call GetBit_score method. More...
void ResetBit_score (void) Reset Bit_score data member. More...
TBit_score GetBit_score (void) const Get the Bit_score member data. More...
void SetBit_score (TBit_score value) Assign a value to Bit_score data member. More...
TBit_score & SetBit_score (void) Assign a value to Bit_score data member. More...
bool IsSetNum_identities (void) const Number of identities Check if a value has been assigned to Num_identities data member. More...
bool CanGetNum_identities (void) const Check if it is safe to call GetNum_identities method. More...
void ResetNum_identities (void) Reset Num_identities data member. More...
TNum_identities GetNum_identities (void) const Get the Num_identities member data. More...
void SetNum_identities (TNum_identities value) Assign a value to Num_identities data member. More...
TNum_identities & SetNum_identities (void) Assign a value to Num_identities data member. More...
bool IsSetNum_indels (void) const Number of insertions/deletions Check if a value has been assigned to Num_indels data member. More...
bool CanGetNum_indels (void) const Check if it is safe to call GetNum_indels method. More...
void ResetNum_indels (void) Reset Num_indels data member. More...
TNum_indels GetNum_indels (void) const Get the Num_indels member data. More...
void SetNum_indels (TNum_indels value) Assign a value to Num_indels data member. More...
TNum_indels & SetNum_indels (void) Assign a value to Num_indels data member. More...
bool IsSetFull_query_range (void) const Full query range covered by this HSP Check if a value has been assigned to Full_query_range data member. More...
bool CanGetFull_query_range (void) const Check if it is safe to call GetFull_query_range method. More...
void ResetFull_query_range (void) Reset Full_query_range data member. More...
const TFull_query_range & GetFull_query_range (void) const Get the Full_query_range member data. More...
void SetFull_query_range (TFull_query_range &value) Assign a value to Full_query_range data member. More...
TFull_query_range & SetFull_query_range (void) Assign a value to Full_query_range data member. More...
bool IsSetFull_subject_range (void) const Full subject range covered by this HSP Check if a value has been assigned to Full_subject_range data member. More...
bool CanGetFull_subject_range (void) const Check if it is safe to call GetFull_subject_range method. More...
void ResetFull_subject_range (void) Reset Full_subject_range data member. More...
const TFull_subject_range & GetFull_subject_range (void) const Get the Full_subject_range member data. More...
void SetFull_subject_range (TFull_subject_range &value) Assign a value to Full_subject_range data member. More...
TFull_subject_range & SetFull_subject_range (void) Assign a value to Full_subject_range data member. More...
virtual void Reset (void) Reset the whole object. More...
CSerialObject (void) virtual ~CSerialObject (void) virtual const CTypeInfo * GetThisTypeInfo (void) const =0 virtual void Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive) Set object to copy of another one. More...
virtual bool Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const Check if both objects contain the same values. More...
virtual void DebugDump (CDebugDumpContext ddc, unsigned int depth) const Define method for dumping debug information. More...
void ThrowUnassigned (TMemberIndex index) const void ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const bool HasNamespaceName (void) const Check if object data type has namespace name. More...
const string & GetNamespaceName (void) const Get namespace name. More...
bool HasNamespacePrefix (void) const Check if data type has namespace prefix. More...
const string & GetNamespacePrefix (void) const Get namespace prefix. More...
CObject (void) Constructor. More...
CObject (const CObject &src) Copy constructor. More...
virtual ~CObject (void) Destructor. More...
CObject & operator= (const CObject &src) THROWS_NONE Assignment operator. More...
bool CanBeDeleted (void) const THROWS_NONE Check if object can be deleted. More...
bool IsAllocatedInPool (void) const THROWS_NONE Check if object is allocated in memory pool (not system heap) More...
bool Referenced (void) const THROWS_NONE Check if object is referenced. More...
bool ReferencedOnlyOnce (void) const THROWS_NONE Check if object is referenced only once. More...
void AddReference (void) const Add reference to object. More...
void RemoveReference (void) const Remove reference to object. More...
void ReleaseReference (void) const Remove reference without deleting object. More...
virtual void DoNotDeleteThisObject (void) Mark this object as not allocated in heap – do not delete this object. More...
virtual void DoDeleteThisObject (void) Mark this object as allocated in heap – object can be deleted. More...
void * operator new (size_t size) Define new operator for memory allocation. More...
void * operator new[] (size_t size) Define new[] operator for 'array' memory allocation. More...
void operator delete (void *ptr) Define delete operator for memory deallocation. More...
void operator delete[] (void *ptr) Define delete[] operator for memory deallocation. More...
void * operator new (size_t size, void *place) Define new operator. More...
void operator delete (void *ptr, void *place) Define delete operator. More...
void * operator new (size_t size, CObjectMemoryPool *place) Define new operator using memory pool. More...
void operator delete (void *ptr, CObjectMemoryPool *place) Define delete operator. More...
CDebugDumpable (void) virtual ~CDebugDumpable (void) void DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const void DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const void DumpToConsole (void) const
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