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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/classCApplyObject.html below:

NCBI C++ ToolKit: CApplyObject Class Reference

#include <objtools/edit/apply_object.hpp>

CApplyObject (CSeq_entry_Handle seh, CConstRef< CObject > orig, CRef< CObject > editable) CApplyObject (CBioseq_Handle bsh, const CSeqdesc &desc) CApplyObject (CBioseq_Handle bsh, CSeqdesc::E_Choice subtype) CApplyObject (CBioseq_Handle bsh, const string &user_label) CApplyObject (CBioseq_Handle bsh, const CSeq_feat &feat) CApplyObject (CBioseq_Handle bsh) bool PreExists () const CObject & SetObject () const CObject & GetObject () const const CObject * GetOriginalObject () const void ReplaceEditable (CObject &edit) void DeleteEditable (bool do_delete=true) CSeq_entry_Handle GetSEH () const void ApplyChange () CObject (void) Constructor. More...
CObject (const CObject &src) Copy constructor. More...
virtual ~CObject (void) Destructor. More...
CObject & operator= (const CObject &src) THROWS_NONE Assignment operator. More...
bool CanBeDeleted (void) const THROWS_NONE Check if object can be deleted. More...
bool IsAllocatedInPool (void) const THROWS_NONE Check if object is allocated in memory pool (not system heap) More...
bool Referenced (void) const THROWS_NONE Check if object is referenced. More...
bool ReferencedOnlyOnce (void) const THROWS_NONE Check if object is referenced only once. More...
void AddReference (void) const Add reference to object. More...
void RemoveReference (void) const Remove reference to object. More...
void ReleaseReference (void) const Remove reference without deleting object. More...
virtual void DoNotDeleteThisObject (void) Mark this object as not allocated in heap – do not delete this object. More...
virtual void DoDeleteThisObject (void) Mark this object as allocated in heap – object can be deleted. More...
void * operator new (size_t size) Define new operator for memory allocation. More...
void * operator new[] (size_t size) Define new[] operator for 'array' memory allocation. More...
void operator delete (void *ptr) Define delete operator for memory deallocation. More...
void operator delete[] (void *ptr) Define delete[] operator for memory deallocation. More...
void * operator new (size_t size, void *place) Define new operator. More...
void operator delete (void *ptr, void *place) Define delete operator. More...
void * operator new (size_t size, CObjectMemoryPool *place) Define new operator using memory pool. More...
void operator delete (void *ptr, CObjectMemoryPool *place) Define delete operator. More...
virtual void DebugDump (CDebugDumpContext ddc, unsigned int depth) const Define method for dumping debug information. More...
CDebugDumpable (void) virtual ~CDebugDumpable (void) void DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const void DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const void DumpToConsole (void) const

Definition at line 50 of file apply_object.hpp.

◆ CApplyObject() [1/6] ◆ CApplyObject() [2/6] ◆ CApplyObject() [3/6]

Definition at line 66 of file apply_object.cpp.

References CSeqdesc_Base::e_Molinfo, CSeqdesc_Base::e_Title, CBioseq_set_Base::eClass_nuc_prot, CBioseq_set_Handle::GetClass(), CBioseq_Handle::GetParentBioseq_set(), CBioseq_Handle::GetParentEntry(), CBioseq_set_Handle::GetParentEntry(), CRef< C, Locker >::GetPointer(), CBioseq_set_Handle::IsSetClass(), m_Editable, m_Original, m_SEH, CConstRef< C, Locker >::Reset(), and CSeqdesc_Base::Select().

◆ CApplyObject() [4/6]

Definition at line 83 of file apply_object.cpp.

References CBioseq_set_Base::eClass_nuc_prot, CBioseq_set_Handle::GetClass(), CBioseq_Handle::GetParentBioseq_set(), CBioseq_Handle::GetParentEntry(), CBioseq_set_Handle::GetParentEntry(), CRef< C, Locker >::GetPointer(), CBioseq_set_Handle::IsSetClass(), m_Editable, m_Original, m_SEH, CConstRef< C, Locker >::Reset(), CUser_object_Base::SetType(), and CSeqdesc_Base::SetUser().

◆ CApplyObject() [5/6] ◆ CApplyObject() [6/6]

Definition at line 108 of file apply_object.cpp.

References CSerialObject::Assign(), CBioseq_Handle::GetCompleteBioseq(), CBioseq_Handle::GetParentEntry(), CConstRef< C, Locker >::GetPointer(), CRef< C, Locker >::GetPointer(), m_Editable, m_Original, m_SEH, and CConstRef< C, Locker >::Reset().

◆ ApplyChange() void CApplyObject::ApplyChange ( )

Definition at line 118 of file apply_object.cpp.

References CSeq_annot_EditHandle::AddFeat(), CSeq_entry_EditHandle::AddSeqdesc(), CSerialObject::Assign(), CSeq_entry_EditHandle::AttachAnnot(), CBioseq_set_Base::eClass_nuc_prot, CSeq_annot_CI::eSearch_entry, ftable, CSeq_feat_Handle::GetAnnot(), CSeq_feat_EditHandle::GetAnnot(), CScope::GetBioseqHandle(), CBioseq_set_Handle::GetClass(), CSeq_feat_Base::GetData(), CSeq_feat_Handle::GetData(), CBioseq_Handle::GetEditHandle(), CSeq_entry_Handle::GetEditHandle(), CBioseq_Handle::GetParentBioseq_set(), CSeq_entry_Handle::GetParentBioseq_set(), CBioseq_set_Handle::GetParentEntry(), CSeq_annot_Handle::GetParentEntry(), CSeq_annot_EditHandle::GetParentEntry(), CConstRef< C, Locker >::GetPointer(), CRef< C, Locker >::GetPointer(), CSeq_feat_Base::GetProduct(), CSeq_entry_Handle::GetScope(), CSeq_entry_Handle::GetSeq(), CScope::GetSeq_featHandle(), GetSeqEntryForSeqdesc(), CSeq_entry_Handle::GetSet(), CSeqFeatData_Base::IsCdregion(), CSeq_entry_Handle::IsSet(), CBioseq_set_Handle::IsSetClass(), CSeq_feat_Base::IsSetData(), CSeq_feat_Handle::IsSetData(), CSeq_feat_Base::IsSetProduct(), CSeq_feat_Handle::IsSetProduct(), m_Delete, m_Editable, m_Original, m_SEH, CSeq_feat_EditHandle::Remove(), CSeq_entry_EditHandle::RemoveSeqdesc(), CSeq_feat_EditHandle::Replace(), CSeq_annot_Base::SetData(), CBioseq_EditHandle::SetInst(), and CSeq_annot_EditHandle::TakeFeat().

◆ DeleteEditable() ◆ GetObject() ◆ GetOriginalObject() ◆ GetSEH() ◆ PreExists() bool CApplyObject::PreExists ( ) const inline ◆ ReplaceEditable() ◆ SetObject() CObject& CApplyObject::SetObject ( void ) inline ◆ m_Delete bool CApplyObject::m_Delete protected ◆ m_Editable ◆ m_Original ◆ m_SEH

The documentation for this class was generated from the following files:

include/objtools/edit/apply_object.hpp
src/objtools/edit/apply_object.cpp

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