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NCBI C++ ToolKit: CAlignmentConfig Class Reference

Search Toolkit Book for CAlignmentConfig

File Description: More...

#include <gui/widgets/seq_graphic/alignment_conf.hpp>

enum ELabelPosition { ePos_Above , ePos_Side , ePos_NoLabel } enum ECompactMode { eNormal , eCompact , eExtremeCompact } enum EHideSraAlignments { eHide_None = 0x0 , eHide_Duplicates = 0x1 , eHide_BadReads = 0x2 , eHide_Both = 0x3 } enum EUnalignedTailsMode { eTails_Hide , eTails_ShowGlyph , eTails_ShowSequence } enum EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern } Control filling of newly allocated memory. More...
typedef CObjectCounterLocker TLockerType Default locker type for CRef. More...
typedef atomic< Uint8 > TCounter Counter type is CAtomiCounter. More...
typedef Uint8 TCount Alias for value type of counter. More...

File Description:

CAlignmentConfig: the data structure holding alignment rendering parameters

Definition at line 48 of file alignment_conf.hpp.

◆ ECompactMode Enumerator eNormal

no compact mode

eCompact

compact mode

eExtremeCompact

extreme compact mode

Definition at line 57 of file alignment_conf.hpp.

◆ EHideSraAlignments Enumerator eHide_None eHide_Duplicates eHide_BadReads eHide_Both

Definition at line 63 of file alignment_conf.hpp.

◆ ELabelPosition Enumerator ePos_Above

above the rendered bar

ePos_Side

always on 5' side

ePos_NoLabel

no label

Definition at line 51 of file alignment_conf.hpp.

◆ EUnalignedTailsMode Enumerator eTails_Hide eTails_ShowGlyph eTails_ShowSequence

Definition at line 70 of file alignment_conf.hpp.

◆ CAlignmentConfig() ◆ m_BarHeight int CAlignmentConfig::m_BarHeight ◆ m_BG ◆ m_CompactMode ◆ m_Dirty bool CAlignmentConfig::m_Dirty mutable ◆ m_FG ◆ m_Gap ◆ m_Insertion ◆ m_Intron ◆ m_Label ◆ m_LabelFont

Definition at line 106 of file alignment_conf.hpp.

Referenced by CAlignSmearGlyph::x_Draw(), CAlignGlyph::x_DrawAlignRowSequence(), CAlignGlyph::x_DrawInternalUnalignedRegions(), CAlignGlyph::x_DrawMultiAlign(), CAlignGlyph::x_DrawMultiAlignLabel(), CAlignGlyph::x_DrawPWAlign(), CAlignGlyph::x_DrawTailGlyphs(), CAlignGlyph::x_GetTailLabelWidth(), CAlignmentTrack::x_LoadAlignmentSettings(), CAlignmentTrack::x_SaveAlignmentSettings(), CAlignGlyph::x_UpdateBoundingBox(), and CAlignSmearGlyph::x_UpdateBoundingBox().

◆ m_LabelPos ◆ m_NonConsensus ◆ m_SeqFont ◆ m_SeqMismatch ◆ m_Sequence ◆ m_ShowIdenticalBases bool CAlignmentConfig::m_ShowIdenticalBases ◆ m_ShowLabel bool CAlignmentConfig::m_ShowLabel ◆ m_ShowUnalignedTailsForTrans2GenomicAln bool CAlignmentConfig::m_ShowUnalignedTailsForTrans2GenomicAln ◆ m_SmearColorMax ◆ m_SmearColorMin ◆ m_TailColor ◆ m_UnalignedFG ◆ m_UnalignedSequence ◆ m_UnalignedTailsMode

The documentation for this class was generated from the following file:

include/gui/widgets/seq_graphic/alignment_conf.hpp

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