Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/classCAlign__annot.html below:
NCBI C++ ToolKit: CAlign_annot Class Reference
CAlign_annot (void) ~CAlign_annot (void) CAlign_annot_Base (void) virtual ~CAlign_annot_Base (void) DECLARE_INTERNAL_TYPE_INFO () bool IsSetLocation (void) const points to a location in one of the aligned sequences, usually the master/representative Check if a value has been assigned to Location data member. More...
bool CanGetLocation (void) const Check if it is safe to call GetLocation method. More...
void ResetLocation (void) Reset Location data member. More...
const TLocation & GetLocation (void) const Get the Location member data. More...
void SetLocation (TLocation &value) Assign a value to Location data member. More...
TLocation & SetLocation (void) Assign a value to Location data member. More...
bool IsSetDescription (void) const to hold descriptions/names like "Heme binding site" or "catalytic triad" etc., something that should be used for labels in visualization Check if a value has been assigned to Description data member. More...
bool CanGetDescription (void) const Check if it is safe to call GetDescription method. More...
void ResetDescription (void) Reset Description data member. More...
const TDescription & GetDescription (void) const Get the Description member data. More...
void SetDescription (const TDescription &value) Assign a value to Description data member. More...
void SetDescription (TDescription &&value) TDescription & SetDescription (void) Assign a value to Description data member. More...
bool IsSetEvidence (void) const evidence we can compute with Check if a value has been assigned to Evidence data member. More...
bool CanGetEvidence (void) const Check if it is safe to call GetEvidence method. More...
void ResetEvidence (void) Reset Evidence data member. More...
const TEvidence & GetEvidence (void) const Get the Evidence member data. More...
TEvidence & SetEvidence (void) Assign a value to Evidence data member. More...
bool IsSetType (void) const for typing annotated features 0 . More...
bool CanGetType (void) const Check if it is safe to call GetType method. More...
void ResetType (void) Reset Type data member. More...
TType GetType (void) const Get the Type member data. More...
void SetType (TType value) Assign a value to Type data member. More...
TType & SetType (void) Assign a value to Type data member. More...
bool IsSetAliases (void) const adding more names for indexing Check if a value has been assigned to Aliases data member. More...
bool CanGetAliases (void) const Check if it is safe to call GetAliases method. More...
void ResetAliases (void) Reset Aliases data member. More...
const TAliases & GetAliases (void) const Get the Aliases member data. More...
TAliases & SetAliases (void) Assign a value to Aliases data member. More...
bool IsSetMotif (void) const to validate mapping of sites Check if a value has been assigned to Motif data member. More...
bool CanGetMotif (void) const Check if it is safe to call GetMotif method. More...
void ResetMotif (void) Reset Motif data member. More...
const TMotif & GetMotif (void) const Get the Motif member data. More...
void SetMotif (const TMotif &value) Assign a value to Motif data member. More...
void SetMotif (TMotif &&value) TMotif & SetMotif (void) Assign a value to Motif data member. More...
bool IsSetMotifuse (void) const 0 for validation, 1 for motif somewhere in seqloc 2 for multiple motifs in seqloc Check if a value has been assigned to Motifuse data member. More...
bool CanGetMotifuse (void) const Check if it is safe to call GetMotifuse method. More...
void ResetMotifuse (void) Reset Motifuse data member. More...
TMotifuse GetMotifuse (void) const Get the Motifuse member data. More...
void SetMotifuse (TMotifuse value) Assign a value to Motifuse data member. More...
TMotifuse & SetMotifuse (void) Assign a value to Motifuse data member. More...
virtual void Reset (void) Reset the whole object. More...
CSerialObject (void) virtual ~CSerialObject (void) virtual const CTypeInfo * GetThisTypeInfo (void) const =0 virtual void Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive) Set object to copy of another one. More...
virtual bool Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const Check if both objects contain the same values. More...
virtual void DebugDump (CDebugDumpContext ddc, unsigned int depth) const Define method for dumping debug information. More...
void ThrowUnassigned (TMemberIndex index) const void ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const bool HasNamespaceName (void) const Check if object data type has namespace name. More...
const string & GetNamespaceName (void) const Get namespace name. More...
bool HasNamespacePrefix (void) const Check if data type has namespace prefix. More...
const string & GetNamespacePrefix (void) const Get namespace prefix. More...
CObject (void) Constructor. More...
CObject (const CObject &src) Copy constructor. More...
virtual ~CObject (void) Destructor. More...
CObject & operator= (const CObject &src) THROWS_NONE Assignment operator. More...
bool CanBeDeleted (void) const THROWS_NONE Check if object can be deleted. More...
bool IsAllocatedInPool (void) const THROWS_NONE Check if object is allocated in memory pool (not system heap) More...
bool Referenced (void) const THROWS_NONE Check if object is referenced. More...
bool ReferencedOnlyOnce (void) const THROWS_NONE Check if object is referenced only once. More...
void AddReference (void) const Add reference to object. More...
void RemoveReference (void) const Remove reference to object. More...
void ReleaseReference (void) const Remove reference without deleting object. More...
virtual void DoNotDeleteThisObject (void) Mark this object as not allocated in heap – do not delete this object. More...
virtual void DoDeleteThisObject (void) Mark this object as allocated in heap – object can be deleted. More...
void * operator new (size_t size) Define new operator for memory allocation. More...
void * operator new[] (size_t size) Define new[] operator for 'array' memory allocation. More...
void operator delete (void *ptr) Define delete operator for memory deallocation. More...
void operator delete[] (void *ptr) Define delete[] operator for memory deallocation. More...
void * operator new (size_t size, void *place) Define new operator. More...
void operator delete (void *ptr, void *place) Define delete operator. More...
void * operator new (size_t size, CObjectMemoryPool *place) Define new operator using memory pool. More...
void operator delete (void *ptr, CObjectMemoryPool *place) Define delete operator. More...
CDebugDumpable (void) virtual ~CDebugDumpable (void) void DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const void DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const void DumpToConsole (void) const enum class E_memberIndex {
e__allMandatory = 0 , e_location , e_description , e_evidence ,
e_type , e_aliases , e_motif , e_motifuse
} typedef CSeq_loc TLocation typedef string TDescription typedef list< CRef< CFeature_evidence > > TEvidence typedef int TType typedef list< string > TAliases typedef string TMotif typedef int TMotifuse typedef Tparent::CMemberIndex< E_memberIndex, 8 > TmemberIndex enum EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern } Control filling of newly allocated memory. More...
typedef CObjectCounterLocker TLockerType Default locker type for CRef. More...
typedef atomic< Uint8 > TCounter Counter type is CAtomiCounter. More...
typedef Uint8 TCount Alias for value type of counter. More...
static void SetVerifyDataThread (ESerialVerifyData verify) static void SetVerifyDataGlobal (ESerialVerifyData verify) static string UnassignedString (void) static CStringUTF8 UnassignedStringUTF8 (void) static char UnassignedByte (void) static NCBI_XNCBI_EXPORT void ThrowNullPointerException (void) Define method to throw null pointer exception. More...
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (const type_info &type) static EAllocFillMode GetAllocFillMode (void) static void SetAllocFillMode (EAllocFillMode mode) static void SetAllocFillMode (const string &value) Set mode from configuration parameter value. More...
static void EnableDebugDump (bool on) static const char * ms_UnassignedStr = "<*unassigned*>" static const char ms_UnassignedByte = char(0xcd) static const TCount eCounterBitsCanBeDeleted = 1 << 0 Define possible object states. More...
static const TCount eCounterBitsInPlainHeap = 1 << 1 Heap signature was found. More...
static const TCount eCounterBitsPlaceMask Mask for 'in heap' state flags. More...
static const int eCounterStep = 1 << 2 Skip over the "in heap" bits. More...
static const TCount eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2) Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...
static const TCount eCounterStateMask Valid object, and object in heap. More...
virtual void DeleteThis (void) Virtual method "deleting" this object. More...
CAlign_annot –.
Definition at line 65 of file Align_annot.hpp.
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