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NCBI C++ ToolKit: AlignmentSet Class Reference

Search Toolkit Book for AlignmentSet

#include <objtools/cddalignview/cav_alignset.hpp>

Definition at line 57 of file cav_alignset.hpp.

◆ AlignmentList [1/3] ◆ AlignmentList [2/3] ◆ AlignmentList [3/3] ◆ SeqAnnotList [1/2] ◆ SeqAnnotList [2/2] ◆ AlignmentSet() [1/3]

Definition at line 63 of file cav_alignset.cpp.

References a, alignments, CAV_ERROR_ALIGNMENTS, CAV_SUCCESS, ERR_POST_X, Error(), CSeq_align_Base::eType_diags, CSeq_align_Base::eType_partial, Sequence::GetTitle(), i, Info(), master, SequenceSet::master, Sequence::Matches(), n, ne(), SequenceSet::sequences, status, and Warning().

Referenced by CreateFromMultiple().

◆ ~AlignmentSet() [1/2] AlignmentSet::~AlignmentSet ( void  ) ◆ AlignmentSet() [2/3]

Definition at line 54 of file su_alignment_set.cpp.

References a, CSeq_align_Base::eType_diags, CSeq_align_Base::eType_partial, Sequence::IdentifierString(), l(), le(), Sequence::MatchesSeqId(), n, ne(), NULL, THROW_MESSAGE, TRACE_MESSAGE, and WARNING_MESSAGE.

◆ AlignmentSet() [3/3] ◆ ~AlignmentSet() [2/2] AlignmentSet::~AlignmentSet ( void  ) ◆ CreateFromMultiple() [1/2]

Definition at line 146 of file su_alignment_set.cpp.

References AlignmentSet(), blocks, CreatePairwiseSeqAlignFromMultipleRow(), ERROR_MESSAGE, CException::GetMsg(), BlockMultipleAlignment::GetUngappedAlignedBlocks(), i, newAsnAlignmentData, BlockMultipleAlignment::NRows(), NULL, row, CSeq_annot_Base::SetData(), and map_checker< Container >::size().

Referenced by AlignmentUtility::GetSeqAnnots(), and AlignmentManager::SavePairwiseFromMultiple().

◆ CreateFromMultiple() [2/2]

Definition at line 81 of file alignment_set.cpp.

References AlignmentSet(), blocks, CreatePairwiseSeqAlignFromMultipleRow(), ERRORMSG, BlockMultipleAlignment::GetMaster(), BlockMultipleAlignment::GetUngappedAlignedBlocks(), i, newAsnAlignmentData, BlockMultipleAlignment::NRows(), NULL, row, CSeq_annot_Base::SetData(), and map_checker< Container >::size().

◆ Draw() ◆ Status() ◆ alignments

Definition at line 67 of file cav_alignset.hpp.

Referenced by AlignmentDisplay::AlignmentDisplay(), AlignmentSet(), AlignmentManager::GetAlignmentSetDependentSequences(), AlignmentManager::GetAlignmentSetDependentVisibilities(), StructureSet::LoadAlignmentsAndStructures(), AlignmentManager::NewAlignments(), AlignmentManager::NewMultipleWithRows(), ASNDataManager::RemoveUnusedSequences(), SetStructureRowFlags(), AlignmentManager::ShowHideCallbackFunction(), and VerifyAlignmentData().

◆ m_alignments ◆ m_master ◆ master ◆ newAsnAlignmentData ◆ status

The documentation for this class was generated from the following files:

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