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NCBI C++ ToolKit: include/objtools/cddalignview/cav_seqset.hpp Source File

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(

)

{

status; }

list < CRef < objects::CSeq_id > >

;

(

objects::CSeq_id& seqID)

;

list< CRef< objects::CSeq_entry > > SeqEntryList

vector< const Sequence * > SequenceList

std::list< ncbi::CRef< ncbi::objects::CSeq_entry > > SeqEntryList

std::list< ncbi::CRef< Sequence > > SequenceList

SequenceSet(const objects::CSeq_entry &seqEntry)

bool Matches(const objects::CSeq_id &seqID) const

Sequence(const objects::CBioseq &bioseq)

string GetLabel(void) const

unsigned int Length(void) const

string GetTitle(void) const

list< CRef< objects::CSeq_id > > SeqIdList

CConstRef< objects::CBioseq > bioseqASN

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

Portable reference counted smart and weak pointers using CWeakRef, CRef, CObject and CObjectEx.

The NCBI C++/STL use hints.

static void UnpackSeqSet(CBioseq_set &bss, SequenceSet::SequenceList &seqlist)

static void UnpackSeqEntry(CSeq_entry &seqEntry, SequenceSet::SequenceList &seqlist)

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