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NCBI C++ ToolKit: src/objtools/cddalignview/cav_function.cpp File Reference

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  USING_SCOPE (objects)   static int  LoadASNFromIstream (CNcbiIstream &asnIstream, const SeqEntryList **sequences, const SeqAnnotList **alignments)   static bool  VerifyAlignmentData (const AlignmentSet *alignmentSet, const AlignmentDisplay *display)   int  CAV_DisplayMultiple (const SeqEntryList &sequences, const SeqAnnotList &alignments, unsigned int options, unsigned int paragraphWidth, double conservationThreshhold, const char *title, int nFeatures, const AlignmentFeature *alnFeatures, CNcbiOstream *outputStream, CNcbiOstream *diagnosticStream)   int  CAV_DisplayMultiple (const void *asnDataBlock, int asnSize, unsigned int options, unsigned int paragraphWidth, double conservationThreshhold, const char *title, int nFeatures, const AlignmentFeature *alnFeatures, CNcbiOstream *outputStream, CNcbiOstream *diagnosticStream)   int  CAV_DisplayMultiple (const void *asnDataBlock, int asnSize, unsigned int options, unsigned int paragraphWidth, double conservationThreshhold, const char *title, int nFeatures, const AlignmentFeature *features)   int  CAV_DisplayMultiple (const ncbi::objects::CNcbi_mime_asn1 &mime, unsigned int options, unsigned int paragraphWidth, double conservationThreshhold, const char *title, int nFeatures, const AlignmentFeature *features, ncbi::CNcbiOstream *outputStream, ncbi::CNcbiOstream *diagnosticStream)   ◆ NCBI_USE_ERRCODE_X #define NCBI_USE_ERRCODE_X   Objtools_CAV_Func

Definition at line 59 of file cav_function.cpp.

◆ CAV_DisplayMultiple() [1/4] ◆ CAV_DisplayMultiple() [2/4]

Definition at line 280 of file cav_function.cpp.

References CAV_CONDENSED, CAV_DEBUG, CAV_ERROR_BAD_PARAMS, CAV_ERROR_DISPLAY, CAV_FASTA, CAV_FASTA_LOWERCASE, CAV_HTML, CAV_HTML_HEADER, CAV_IGNORE_BAD_ALN, CAV_LEFTTAILS, CAV_NO_CHANGE_DIAG, CAV_RIGHTTAILS, CAV_SHOW_IDENTITY, CAV_SUCCESS, CAV_TEXT, Critical(), defaultDiagPostLevel, eDiag_Error, eDiag_Info, ERR_POST_X, Error(), Info(), NcbiCerr, NcbiCout, SetDiagPostLevel(), SetDiagStream(), AlignmentDisplay::SHOW_IDENTITY, and VerifyAlignmentData().

Referenced by CAV_DisplayMultiple().

◆ CAV_DisplayMultiple() [3/4] ◆ CAV_DisplayMultiple() [4/4] ◆ LoadASNFromIstream()

Definition at line 67 of file cav_function.cpp.

References CAV_ERROR_BAD_ASN, CAV_SUCCESS, defaultDiagPostLevel, eDiag_Fatal, ERR_POST_X, Error(), NULL, ReadASNFromIstream(), CRef< C, Locker >::Reset(), and SetDiagPostLevel().

Referenced by CAV_DisplayMultiple().

◆ USING_SCOPE() ◆ VerifyAlignmentData()

Definition at line 158 of file cav_function.cpp.

References AlignmentSet::alignments, ERR_POST_X, Error(), AlignmentDisplay::GetCharAt(), AlignmentDisplay::GetWidth(), i, int, IsAligned(), IsGap(), IsUnaligned(), MasterSlaveAlignment::master, MasterSlaveAlignment::masterToSlave, Sequence::sequenceString, MasterSlaveAlignment::slave, and toupper().

Referenced by CAV_DisplayMultiple().

◆ defaultDiagPostLevel ◆ USING_NCBI_SCOPE

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