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NCBI C++ ToolKit: include/objtools/cddalignview/cav_alignset.hpp Source File

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objects::CSeq_align& seqAlign);

list< CRef< objects::CSeq_annot > > SeqAnnotList

vector< const MasterSlaveAlignment * > AlignmentList

std::list< ncbi::CRef< ncbi::objects::CSeq_annot > > SeqAnnotList

MasterSlaveAlignment(const SequenceSet *sequenceSet, const Sequence *masterSequence, const objects::CSeq_align &seqAlign)

vector< int > ResidueVector

ResidueVector masterToSlave

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

The NCBI C++/STL use hints.

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