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NCBI C++ ToolKit: src/util/compress/bzip2/bzip2.c Source File

37 #if defined(_WIN32) && !defined(__CYGWIN__) 59 #define ERROR_IF_EOF(i) { if ((i) == EOF) ioError(); } 60 #define ERROR_IF_NOT_ZERO(i) { if ((i) != 0) ioError(); } 61 #define ERROR_IF_MINUS_ONE(i) { if ((i) == (-1)) ioError(); } 71 # include <sys/types.h> 74 # include <sys/stat.h> 75 # include <sys/times.h> 78 # define MY_LSTAT lstat 80 # define MY_S_ISREG S_ISREG 81 # define MY_S_ISDIR S_ISDIR 83 # define APPEND_FILESPEC(root, name) \ 84  root=snocString((root), (name)) 86 # define APPEND_FLAG(root, name) \ 87  root=snocString((root), (name)) 89 # define SET_BINARY_MODE(fd) 92 # define NORETURN __attribute__ ((noreturn)) 102 # define MY_LSTAT stat 103 # define MY_STAT stat 104 # undef SET_BINARY_MODE 105 # define SET_BINARY_MODE(fd) \ 107  int retVal = setmode ( fileno ( fd ), \ 109  ERROR_IF_MINUS_ONE ( retVal ); \ 116 # undef SET_BINARY_MODE 117 # define SET_BINARY_MODE(fd) \ 119  int retVal = setmode ( fileno ( fd ), \ 121  ERROR_IF_MINUS_ONE ( retVal ); \ 131 # include <sys/stat.h> 134 # define PATH_SEP '\\' 135 # define MY_LSTAT _stati64 136 # define MY_STAT _stati64 137 # define MY_S_ISREG(x) ((x) & _S_IFREG) 138 # define MY_S_ISDIR(x) ((x) & _S_IFDIR) 140 # define APPEND_FLAG(root, name) \ 141  root=snocString((root), (name)) 143 # define APPEND_FILESPEC(root, name) \ 144  root = snocString ((root), (name)) 146 # define SET_BINARY_MODE(fd) \ 148  int retVal = setmode ( fileno ( fd ), \ 150  ERROR_IF_MINUS_ONE ( retVal ); \ 169 #define True ((Bool)1) 170 #define False ((Bool)0) 202 #define FILE_NAME_LEN 1034 240  n

->b[7] = (

UChar

)((hi32 >> 24) & 0xFF);

241  n

->b[6] = (

UChar

)((hi32 >> 16) & 0xFF);

242  n

->b[5] = (

UChar

)((hi32 >> 8) & 0xFF);

243  n

->b[4] = (

UChar

) (hi32 & 0xFF);

244  n

->b[3] = (

UChar

)((lo32 >> 24) & 0xFF);

245  n

->b[2] = (

UChar

)((lo32 >> 16) & 0xFF);

246  n

->b[1] = (

UChar

)((lo32 >> 8) & 0xFF);

247  n

->b[0] = (

UChar

) (lo32 & 0xFF);

257  for

(

i

= 0;

i

< 8;

i

++) {

258

sum += base * (double)(

n

->b[

i

]);

269  for

(

i

= 0;

i

< 8;

i

++)

270  if

(

n

->b[

i

] != 0)

return

0;

282  for

(

i

= 7;

i

>= 0;

i

--) {

283  tmp

= rem * 256 +

n

->b[

i

];

284  n

->b[

i

] =

tmp

/ 10;

303  buf

[nBuf] = q +

'0'

;

307  for

(

i

= 0;

i

< nBuf;

i

++)

321  if

(c == EOF)

return True

;

334  UInt32

nbytes_in_lo32, nbytes_in_hi32;

335  UInt32

nbytes_out_lo32, nbytes_out_hi32;

336  Int32

bzerr, bzerr_dummy, ret;

341  if

(ferror(stream))

goto

errhandler_io;

342  if

(ferror(zStream))

goto

errhandler_io;

346  if

(bzerr !=

BZ_OK

)

goto

errhandler;

348  if

(

verbosity

>= 2) fprintf ( stderr,

"\n"

);

352  if

(

myfeof

(stream))

break

;

353

nIbuf = fread ( ibuf,

sizeof

(

UChar

), 5000, stream );

354  if

(ferror(stream))

goto

errhandler_io;

355  if

(nIbuf > 0)

BZ2_bzWrite

( &bzerr, bzf, (

void

*)ibuf, nIbuf );

356  if

(bzerr !=

BZ_OK

)

goto

errhandler;

361

&nbytes_in_lo32, &nbytes_in_hi32,

362

&nbytes_out_lo32, &nbytes_out_hi32 );

363  if

(bzerr !=

BZ_OK

)

goto

errhandler;

365  if

(ferror(zStream))

goto

errhandler_io;

366

ret = fflush ( zStream );

367  if

(ret == EOF)

goto

errhandler_io;

368  if

(zStream != stdout) {

369  Int32

fd = fileno ( zStream );

370  if

(fd < 0)

goto

errhandler_io;

372

ret = fclose ( zStream );

374  if

(ret == EOF)

goto

errhandler_io;

377  if

(ferror(stream))

goto

errhandler_io;

378

ret = fclose ( stream );

379  if

(ret == EOF)

goto

errhandler_io;

382  if

(nbytes_in_lo32 == 0 && nbytes_in_hi32 == 0) {

383

fprintf ( stderr,

" no data compressed.\n"

);

385  Char

buf_nin[32], buf_nout[32];

386  UInt64

nbytes_in, nbytes_out;

387  double

nbytes_in_d, nbytes_out_d;

389

nbytes_in_lo32, nbytes_in_hi32 );

391

nbytes_out_lo32, nbytes_out_hi32 );

396

fprintf ( stderr,

"%6.3f:1, %6.3f bits/byte, " 397  "%5.2f%% saved, %s in, %s out.\n"

,

398

nbytes_in_d / nbytes_out_d,

399

(8.0 * nbytes_out_d) / nbytes_in_d,

400

100.0 * (1.0 - nbytes_out_d / nbytes_in_d),

411

&nbytes_in_lo32, &nbytes_in_hi32,

412

&nbytes_out_lo32, &nbytes_out_hi32 );

422  panic

(

"compress:unexpected error"

);

425  panic

(

"compress:end"

);

436  Int32

bzerr, bzerr_dummy, ret, nread, streamNo,

i

;

449  if

(ferror(stream))

goto

errhandler_io;

450  if

(ferror(zStream))

goto

errhandler_io;

458  if

(bzf ==

NULL

|| bzerr !=

BZ_OK

)

goto

errhandler;

461  while

(bzerr ==

BZ_OK

) {

462

nread =

BZ2_bzRead

( &bzerr, bzf, obuf, 5000 );

465

fwrite ( obuf,

sizeof

(

UChar

), nread, stream );

466  if

(ferror(stream))

goto

errhandler_io;

471  if

(bzerr !=

BZ_OK

)

panic

(

"decompress:bzReadGetUnused"

);

473

unusedTmp = (

UChar

*)unusedTmpV;

474  for

(

i

= 0;

i

< nUnused;

i

++)

unused

[

i

] = unusedTmp[

i

];

477  if

(bzerr !=

BZ_OK

)

panic

(

"decompress:bzReadGetUnused"

);

479  if

(nUnused == 0 &&

myfeof

(zStream))

break

;

483  if

(ferror(zStream))

goto

errhandler_io;

484  if

(stream != stdout) {

485  Int32

fd = fileno ( stream );

486  if

(fd < 0)

goto

errhandler_io;

489

ret = fclose ( zStream );

490  if

(ret == EOF)

goto

errhandler_io;

492  if

(ferror(stream))

goto

errhandler_io;

493

ret = fflush ( stream );

494  if

(ret != 0)

goto

errhandler_io;

495  if

(stream != stdout) {

496

ret = fclose ( stream );

498  if

(ret == EOF)

goto

errhandler_io;

501  if

(

verbosity

>= 2) fprintf ( stderr,

"\n "

);

508  if

(

myfeof

(zStream))

break

;

509

nread = fread ( obuf,

sizeof

(

UChar

), 5000, zStream );

510  if

(ferror(zStream))

goto

errhandler_io;

511  if

(nread > 0) fwrite ( obuf,

sizeof

(

UChar

), nread, stream );

512  if

(ferror(stream))

goto

errhandler_io;

532  if

(zStream != stdin) fclose(zStream);

533  if

(stream != stdout) fclose(stream);

539  "\n%s: %s: trailing garbage after EOF ignored\n"

,

544  panic

(

"decompress:unexpected error"

);

547  panic

(

"decompress:end"

);

557  Int32

bzerr, bzerr_dummy, ret, streamNo,

i

;

568  if

(ferror(zStream))

goto

errhandler_io;

576  if

(bzf ==

NULL

|| bzerr !=

BZ_OK

)

goto

errhandler;

579  while

(bzerr ==

BZ_OK

) {

586  if

(bzerr !=

BZ_OK

)

panic

(

"test:bzReadGetUnused"

);

588

unusedTmp = (

UChar

*)unusedTmpV;

589  for

(

i

= 0;

i

< nUnused;

i

++)

unused

[

i

] = unusedTmp[

i

];

592  if

(bzerr !=

BZ_OK

)

panic

(

"test:bzReadGetUnused"

);

593  if

(nUnused == 0 &&

myfeof

(zStream))

break

;

597  if

(ferror(zStream))

goto

errhandler_io;

598

ret = fclose ( zStream );

599  if

(ret == EOF)

goto

errhandler_io;

601  if

(

verbosity

>= 2) fprintf ( stderr,

"\n "

);

616  "data integrity (CRC) error in data\n"

);

622  "file ends unexpectedly\n"

);

625  if

(zStream != stdin) fclose(zStream);

628  "bad magic number (file not created by bzip2)\n"

);

633  "trailing garbage after EOF ignored\n"

);

637  panic

(

"test:unexpected error"

);

640  panic

(

"test:end"

);

664  "\nIt is possible that the compressed file(s) have become corrupted.\n" 665  "You can use the -tvv option to test integrity of such files.\n\n" 666  "You can use the `bzip2recover' program to attempt to recover\n" 667  "data from undamaged sections of corrupted files.\n\n" 679  "\tInput file = %s, output file = %s\n"

,

705  "%s: Deleting output file %s, if it exists.\n"

,

712  "%s: WARNING: deletion of output file " 713  "(apparently) failed.\n"

,

717  "%s: WARNING: deletion of output file suppressed\n"

,

720  "%s: since input file no longer exists. Output file\n"

,

723  "%s: `%s' may be incomplete.\n"

,

726  "%s: I suggest doing an integrity test (bzip2 -tv)" 734  "%s: WARNING: some files have not been processed:\n" 735  "%s: %d specified on command line, %d not processed yet.\n\n"

,

749  "\n%s: PANIC -- internal consistency error:\n" 751  "\tThis is a BUG. Please report it to:\n" 752  "\tbzip2-devel@sourceware.org\n"

,

764  "\n%s: Data integrity error when decompressing.\n"

,

778  "\n%s: Compressed file ends unexpectedly;\n\t" 779  "perhaps it is corrupted? *Possible* reason follows.\n"

,

794  "\n%s: I/O or other error, bailing out. " 795  "Possible reason follows.\n"

,

808  "\n%s: Control-C or similar caught, quitting.\n"

,

821  "\n%s: Caught a SIGSEGV or SIGBUS whilst compressing.\n" 823  " Possible causes are (most likely first):\n" 824  " (1) This computer has unreliable memory or cache hardware\n" 825  " (a surprisingly common problem; try a different machine.)\n" 826  " (2) A bug in the compiler used to create this executable\n" 827  " (unlikely, if you didn't compile bzip2 yourself.)\n" 828  " (3) A real bug in bzip2 -- I hope this should never be the case.\n" 829  " The user's manual, Section 4.3, has more info on (1) and (2).\n" 831  " If you suspect this is a bug in bzip2, or are unsure about (1)\n" 832  " or (2), feel free to report it to: bzip2-devel@sourceware.org.\n" 833  " Section 4.3 of the user's manual describes the info a useful\n" 834  " bug report should have. If the manual is available on your\n" 835  " system, please try and read it before mailing me. If you don't\n" 836  " have the manual or can't be bothered to read it, mail me anyway.\n" 842  "\n%s: Caught a SIGSEGV or SIGBUS whilst decompressing.\n" 844  " Possible causes are (most likely first):\n" 845  " (1) The compressed data is corrupted, and bzip2's usual checks\n" 846  " failed to detect this. Try bzip2 -tvv my_file.bz2.\n" 847  " (2) This computer has unreliable memory or cache hardware\n" 848  " (a surprisingly common problem; try a different machine.)\n" 849  " (3) A bug in the compiler used to create this executable\n" 850  " (unlikely, if you didn't compile bzip2 yourself.)\n" 851  " (4) A real bug in bzip2 -- I hope this should never be the case.\n" 852  " The user's manual, Section 4.3, has more info on (2) and (3).\n" 854  " If you suspect this is a bug in bzip2, or are unsure about (2)\n" 855  " or (3), feel free to report it to: bzip2-devel@sourceware.org.\n" 856  " Section 4.3 of the user's manual describes the info a useful\n" 857  " bug report should have. If the manual is available on your\n" 858  " system, please try and read it before mailing me. If you don't\n" 859  " have the manual or can't be bothered to read it, mail me anyway.\n" 875  "\n%s: couldn't allocate enough memory\n"

,

887  "bzip2: I'm not configured correctly for this platform!\n" 888  "\tI require Int32, Int16 and Char to have sizes\n" 889  "\tof 4, 2 and 1 bytes to run properly, and they don't.\n" 890  "\tProbably you can fix this by defining them correctly,\n" 891  "\tand recompiling. Bye!\n"

);

913

fprintf ( stderr,

" "

);

924  "bzip2: file name\n`%s'\n" 925  "is suspiciously (more than %d chars) long.\n" 926  "Try using a reasonable file name instead. Sorry! :-)\n"

,

942

FILE *

tmp

= fopen ( name,

"rb"

);

965

fh = open(name, O_WRONLY|O_CREAT|O_EXCL, S_IWUSR|S_IRUSR);

966  if

(fh == -1)

return NULL

;

971  return

fopen(name,

mode

);

987  if

(

i

!= 0)

return True

;

1004  if

(

i

!= 0)

return

0;

1005  return

(statBuf.st_nlink - 1);

1054  struct

utimbuf uTimBuf;

1059

retVal = utime ( dstName, &uTimBuf );

1094  for

(; *name !=

'\0'

; name++)

1095  if

(*name ==

'?'

|| *name ==

'*'

)

return True

;

1102 #define BZ_N_SUFFIX_PAIRS 4 1105

= {

".bz2"

,

".bz"

,

".tbz2"

,

".tbz"

};

1107

= {

""

,

""

,

".tar"

,

".tar"

};

1112  Int32

ns = strlen(s);

1113  Int32

nx = strlen(suffix);

1114  if

(ns < nx)

return False

;

1115  if

(

strcmp

(s + ns - nx, suffix) == 0)

return True

;

1121  const Char

* oldSuffix,

1122  const Char

* newSuffix )

1125

name[strlen(name)-strlen(oldSuffix)] = 0;

1126  strcat

( name, newSuffix );

1143  panic

(

"compress: bad modes\n"

);

1163

fprintf ( stderr,

"%s: There are no files matching `%s'.\n"

,

1169

fprintf ( stderr,

"%s: Can't open input file %s: %s.\n"

,

1178  "%s: Input file %s already has %s suffix.\n"

,

1188  "%s: Input file %s is a directory.\n"

,

1196

fprintf ( stderr,

"%s: Input file %s is not a normal file.\n"

,

1205

fprintf ( stderr,

"%s: Output file %s already exists.\n"

,

1213

fprintf ( stderr,

"%s: Input file %s has %d other link%s.\n"

,

1230  if

( isatty ( fileno ( stdout ) ) ) {

1232  "%s: I won't write compressed data to a terminal.\n"

,

1234

fprintf ( stderr,

"%s: For help, type: `%s --help'.\n"

,

1242

inStr = fopen (

inName

,

"rb"

);

1244  if

( isatty ( fileno ( stdout ) ) ) {

1246  "%s: I won't write compressed data to a terminal.\n"

,

1248

fprintf ( stderr,

"%s: For help, type: `%s --help'.\n"

,

1250  if

( inStr !=

NULL

) fclose ( inStr );

1254  if

( inStr ==

NULL

) {

1255

fprintf ( stderr,

"%s: Can't open input file %s: %s.\n"

,

1263

inStr = fopen (

inName

,

"rb"

);

1265  if

( outStr ==

NULL

) {

1266

fprintf ( stderr,

"%s: Can't create output file %s: %s.\n"

,

1268  if

( inStr !=

NULL

) fclose ( inStr );

1272  if

( inStr ==

NULL

) {

1273

fprintf ( stderr,

"%s: Can't open input file %s: %s.\n"

,

1275  if

( outStr !=

NULL

) fclose ( outStr );

1282  panic

(

"compress: bad srcMode"

);

1287

fprintf ( stderr,

" %s: "

,

inName

);

1326  panic

(

"uncompress: bad modes\n"

);

1352

fprintf ( stderr,

"%s: There are no files matching `%s'.\n"

,

1358

fprintf ( stderr,

"%s: Can't open input file %s: %s.\n"

,

1367  "%s: Input file %s is a directory.\n"

,

1375

fprintf ( stderr,

"%s: Input file %s is not a normal file.\n"

,

1383  "%s: Can't guess original name for %s -- using %s\n"

,

1391

fprintf ( stderr,

"%s: Output file %s already exists.\n"

,

1399

fprintf ( stderr,

"%s: Input file %s has %d other link%s.\n"

,

1416  if

( isatty ( fileno ( stdin ) ) ) {

1418  "%s: I won't read compressed data from a terminal.\n"

,

1420

fprintf ( stderr,

"%s: For help, type: `%s --help'.\n"

,

1428

inStr = fopen (

inName

,

"rb"

);

1430  if

( inStr ==

NULL

) {

1431

fprintf ( stderr,

"%s: Can't open input file %s:%s.\n"

,

1433  if

( inStr !=

NULL

) fclose ( inStr );

1440

inStr = fopen (

inName

,

"rb"

);

1442  if

( outStr ==

NULL

) {

1443

fprintf ( stderr,

"%s: Can't create output file %s: %s.\n"

,

1445  if

( inStr !=

NULL

) fclose ( inStr );

1449  if

( inStr ==

NULL

) {

1450

fprintf ( stderr,

"%s: Can't open input file %s: %s.\n"

,

1452  if

( outStr !=

NULL

) fclose ( outStr );

1459  panic

(

"uncompress: bad srcMode"

);

1464

fprintf ( stderr,

" %s: "

,

inName

);

1476  if

( magicNumberOK ) {

1495  if

( magicNumberOK ) {

1497

fprintf ( stderr,

"done\n"

);

1501

fprintf ( stderr,

"not a bzip2 file.\n"

);

else 1503  "%s: %s is not a bzip2 file.\n"

,

1521  panic

(

"testf: bad modes\n"

);

1532

fprintf ( stderr,

"%s: There are no files matching `%s'.\n"

,

1538

fprintf ( stderr,

"%s: Can't open input %s: %s.\n"

,

1547  "%s: Input file %s is a directory.\n"

,

1557  if

( isatty ( fileno ( stdin ) ) ) {

1559  "%s: I won't read compressed data from a terminal.\n"

,

1561

fprintf ( stderr,

"%s: For help, type: `%s --help'.\n"

,

1570

inStr = fopen (

inName

,

"rb"

);

1571  if

( inStr ==

NULL

) {

1572

fprintf ( stderr,

"%s: Can't open input file %s:%s.\n"

,

1580  panic

(

"testf: bad srcMode"

);

1585

fprintf ( stderr,

" %s: "

,

inName

);

1594  if

(allOK &&

verbosity

>= 1) fprintf ( stderr,

"ok\n"

);

1605  "bzip2, a block-sorting file compressor. " 1608  " Copyright (C) 1996-2019 by Julian Seward.\n" 1610  " This program is free software; you can redistribute it and/or modify\n" 1611  " it under the terms set out in the LICENSE file, which is included\n" 1612  " in the bzip2 source distribution.\n" 1614  " This program is distributed in the hope that it will be useful,\n" 1615  " but WITHOUT ANY WARRANTY; without even the implied warranty of\n" 1616  " MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the\n" 1617  " LICENSE file for more details.\n" 1630  "bzip2, a block-sorting file compressor. " 1632  "\n usage: %s [flags and input files in any order]\n" 1634  " -h --help print this message\n" 1635  " -d --decompress force decompression\n" 1636  " -z --compress force compression\n" 1637  " -k --keep keep (don't delete) input files\n" 1638  " -f --force overwrite existing output files\n" 1639  " -t --test test compressed file integrity\n" 1640  " -c --stdout output to standard out\n" 1641  " -q --quiet suppress noncritical error messages\n" 1642  " -v --verbose be verbose (a 2nd -v gives more)\n" 1643  " -L --license display software version & license\n" 1644  " -V --version display software version & license\n" 1645  " -s --small use less memory (at most 2500k)\n" 1646  " -1 .. -9 set block size to 100k .. 900k\n" 1647  " --fast alias for -1\n" 1648  " --best alias for -9\n" 1650  " If invoked as `bzip2', default action is to compress.\n" 1651  " as `bunzip2', default action is to decompress.\n" 1652  " as `bzcat', default action is to decompress to stdout.\n" 1654  " If no file names are given, bzip2 compresses or decompresses\n" 1655  " from standard input to standard output. You can combine\n" 1656  " short flags, so `-v -4' means the same as -v4 or -4v, &c.\n" 1674  "%s: %s is redundant in versions 0.9.5 and above\n"

,

1731  if

(root ==

NULL

) {

1752

envbase = getenv(varName);

1753  if

(envbase !=

NULL

) {

1757  if

(p[

i

] == 0)

break

;

1764  for

(j = 0; j < k; j++)

tmpName

[j] = p[j];

1774 #define ISFLAG(s) (strcmp(aa->name, (s))==0) 1785  if

(

sizeof

(

Int32

) != 4 ||

sizeof

(

UInt32

) != 4 ||

1786  sizeof

(

Int16

) != 2 ||

sizeof

(

UInt16

) != 2 ||

1787  sizeof

(

Char

) != 1 ||

sizeof

(

UChar

) != 1)

1830  for

(

i

= 1;

i

<= argc-1;

i

++)

1838  for

(aa = argList; aa !=

NULL

; aa = aa->link) {

1840  if

(aa->name[0] ==

'-'

&&

decode

)

continue

;

1856  if

( (strstr (

progName

,

"unzip"

) != 0) ||

1857

(strstr (

progName

,

"UNZIP"

) != 0) )

1860  if

( (strstr (

progName

,

"z2cat"

) != 0) ||

1861

(strstr (

progName

,

"Z2CAT"

) != 0) ||

1862

(strstr (

progName

,

"zcat"

) != 0) ||

1863

(strstr (

progName

,

"ZCAT"

) != 0) ) {

1870  for

(aa = argList; aa !=

NULL

; aa = aa->link) {

1871  if

(

ISFLAG

(

"--"

))

break

;

1872  if

(aa->name[0] ==

'-'

&& aa->name[1] !=

'-'

) {

1873  for

(j = 1; aa->name[j] !=

'\0'

; j++) {

1874  switch

(aa->name[j]) {

1893  case 'L'

:

license

();

break

;

1898  default

: fprintf ( stderr,

"%s: Bad flag `%s'\n"

,

1909  for

(aa = argList; aa !=

NULL

; aa = aa->link) {

1910  if

(

ISFLAG

(

"--"

))

break

;

1929  if

(

strncmp

( aa->name,

"--"

, 2) == 0) {

1930

fprintf ( stderr,

"%s: Bad flag `%s'\n"

,

progName

, aa->name );

1941

fprintf ( stderr,

"%s: -c and -t cannot be used together.\n"

,

1964  for

(aa = argList; aa !=

NULL

; aa = aa->link) {

1966  if

(aa->name[0] ==

'-'

&&

decode

)

continue

;

1980  for

(aa = argList; aa !=

NULL

; aa = aa->link) {

1982  if

(aa->name[0] ==

'-'

&&

decode

)

continue

;

1999  for

(aa = argList; aa !=

NULL

; aa = aa->link) {

2001  if

(aa->name[0] ==

'-'

&&

decode

)

continue

;

2010  "You can use the `bzip2recover' program to attempt to recover\n" 2011  "data from undamaged sections of corrupted files.\n\n" 2023  while

(aa !=

NULL

) {

2024  Cell

* aa2 = aa->link;

2025  if

(aa->name !=

NULL

)

free

(aa->name);

static void uInt64_from_UInt32s(UInt64 *n, UInt32 lo32, UInt32 hi32)

static void outOfMemory(void)

static Bool uInt64_isZero(UInt64 *n)

static void applySavedFileAttrToOutputFile(IntNative fd)

static void cadvise(void)

#define APPEND_FILESPEC(root, name)

static void addFlagsFromEnvVar(Cell **argList, Char *varName)

static void setExit(Int32 v)

static Bool testStream(FILE *zStream)

static void uInt64_toAscii(char *outbuf, UInt64 *n)

static double uInt64_to_double(UInt64 *n)

static void ioError(void)

FILE * outputHandleJustInCase

#define SET_BINARY_MODE(fd)

static Bool notAStandardFile(Char *name)

static void uncompress(Char *name)

#define ERROR_IF_NOT_ZERO(i)

static void * myMalloc(Int32)

static void mySignalCatcher(IntNative n)

static void cleanUpAndFail(Int32)

static void license(void)

static void compress(Char *name)

IntNative main(IntNative argc, Char *argv[])

static void testf(Char *name)

static Int32 countHardLinks(Char *name)

static struct stat fileMetaInfo

static void compressedStreamEOF(void)

#define APPEND_FLAG(root, name)

static Bool uncompressStream(FILE *zStream, FILE *stream)

static void compressStream(FILE *stream, FILE *zStream)

static Bool hasSuffix(Char *s, const Char *suffix)

static void applySavedTimeInfoToOutputFile(Char *dstName)

static Int32 uInt64_qrm10(UInt64 *n)

#define BZ_N_SUFFIX_PAIRS

static void redundant(Char *flag)

static void usage(Char *fullProgName)

static Bool mapSuffix(Char *name, const Char *oldSuffix, const Char *newSuffix)

static void copyFileName(Char *, Char *)

Bool deleteOutputOnInterrupt

static Cell * mkCell(void)

static void mySIGSEGVorSIGBUScatcher(IntNative n)

static void panic(const Char *)

static Cell * snocString(Cell *root, Char *name)

static void showFileNames(void)

static Bool containsDubiousChars(Char *name)

Char progNameReally[1034]

static void configError(void)

static Bool myfeof(FILE *f)

static FILE * fopen_output_safely(Char *name, const char *mode)

const Char * unzSuffix[4]

static void saveInputFileMetaInfo(Char *srcName)

static void crcError(void)

static Bool fileExists(Char *name)

void BZ2_bzReadGetUnused(int *bzerror, BZFILE *b, void **unused, int *nUnused)

const char * BZ2_bzlibVersion(void)

void BZ2_bzWrite(int *bzerror, BZFILE *b, void *buf, int len)

#define BZ_DATA_ERROR_MAGIC

int BZ2_bzRead(int *bzerror, BZFILE *b, void *buf, int len)

BZFILE * BZ2_bzReadOpen(int *bzerror, FILE *f, int verbosity, int small, void *unused, int nUnused)

BZFILE * BZ2_bzWriteOpen(int *bzerror, FILE *f, int blockSize100k, int verbosity, int workFactor)

#define BZ_UNEXPECTED_EOF

void BZ2_bzReadClose(int *bzerror, BZFILE *b)

void BZ2_bzWriteClose64(int *bzerror, BZFILE *b, int abandon, unsigned int *nbytes_in_lo32, unsigned int *nbytes_in_hi32, unsigned int *nbytes_out_lo32, unsigned int *nbytes_out_hi32)

static void DLIST_NAME() remove(DLIST_LIST_TYPE *list, DLIST_TYPE *item)

NCBI_DEPRECATED_CLASS NCBI_XCGI_EXPORT EUrlEncode decode

char Char

Alias for char.

static const CS_INT unused

int strncmp(const char *str1, const char *str2, size_t count)

int strcmp(const char *str1, const char *str2)

uchar outbuf[(1000000+1000000)]

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