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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/bulk__gene__edit_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/packages/pkg_sequence_edit/bulk_gene_edit.cpp Source File

IMPLEMENT_DYNAMIC_CLASS(

, wxDialog )

wxWindowID

,

wxString& caption,

wxPoint& pos,

wxSize&

,

style )

(parent,

, caption, pos,

, style);

wxWindowID

,

wxString& caption,

wxPoint& pos,

wxSize&

,

style )

: m_FeatHandles(feat_handles)

(parent,

, caption, pos,

, style);

( wxWindow* parent, wxWindowID

,

wxString& caption,

wxPoint& pos,

wxSize&

,

style )

SetExtraStyle(wxWS_EX_BLOCK_EVENTS);

SetLayoutAdaptationMode(wxDIALOG_ADAPTATION_MODE_ENABLED);

wxDialog::Create( parent,

, caption, pos,

, style );

GetSizer()->SetSizeHints(

);

wxBoxSizer* itemBoxSizer2 =

wxBoxSizer(wxVERTICAL);

itemDialog1->SetSizer(itemBoxSizer2);

wxBoxSizer* itemBoxSizer3 =

wxBoxSizer(wxHORIZONTAL);

itemBoxSizer2->Add(itemBoxSizer3, 0, wxALIGN_CENTER_HORIZONTAL|wxALL, 5);

wxArrayString itemChoiceStrings, itemChoiceStringsWritable;

wxMessageBox(

(

),

(

), wxOK | wxICON_ERROR);

(values_table->GetNum_rows() < 1)

wxMessageBox(

(

),

(

), wxOK | wxICON_ERROR);

itemBoxSizer3->Add(

, 0, wxALIGN_TOP|wxALL, 5);

->SetTable(gridAdapter,

);

->AutoSizeColumns();

l_height =

->GetColLabelSize();

->SetColLabelSize( 2 * l_height );

((*it)->IsSetHeader() && (*it)->GetHeader().IsSetTitle() )

title = (*it)->GetHeader().GetTitle();

itemChoiceStrings.Add(wxString(title));

itemChoiceStringsWritable.Add(wxString(title));

(glyph_col >= 0 && glyph_col+1 <

->GetNumberCols())

itemBoxSizer2->Add(itemStringConstraintPanel, 0, wxALIGN_CENTER_HORIZONTAL|wxALL|

, 0);

wxBoxSizer* itemBoxSizer13 =

wxBoxSizer(wxHORIZONTAL);

itemBoxSizer2->Add(itemBoxSizer13, 0, wxALIGN_CENTER_HORIZONTAL|wxALL, 5);

wxButton* itemButton14 =

wxButton( itemDialog1, wxID_OK,

(

), wxDefaultPosition, wxDefaultSize, 0 );

itemBoxSizer13->Add(itemButton14, 0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

wxButton* itemButton15 =

wxButton( itemDialog1, wxID_CANCEL,

(

), wxDefaultPosition, wxDefaultSize, 0 );

itemBoxSizer13->Add(itemButton15, 0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

id_col->SetHeader().SetField_id(objects::CSeqTable_column_info::eField_id_location_id);

expand_col->SetHeader().SetTitle(

);

expand_col->SetHeader().SetField_name(

);

expand_col->SetData().SetString();

locus_col->SetHeader().SetTitle(

);

locus_col->SetHeader().SetField_name(

);

locus_col->SetData().SetString();

locus_tag_col->SetHeader().SetTitle(

);

locus_tag_col->SetHeader().SetField_name(

);

locus_tag_col->SetData().SetString();

desc_col->SetHeader().SetTitle(

);

desc_col->SetHeader().SetField_name(

);

desc_col->SetData().SetString();

loc_col->SetHeader().SetTitle(

);

loc_col->SetHeader().SetField_name(

);

loc_col->SetData().SetString();

comment_col->SetHeader().SetTitle(

);

comment_col->SetHeader().SetField_name(

);

comment_col->SetData().SetString();

allele_col->SetHeader().SetTitle(

);

allele_col->SetHeader().SetField_name(

);

allele_col->SetData().SetString();

synonym_col->SetHeader().SetTitle(

);

synonym_col->SetHeader().SetField_name(

);

synonym_col->SetData().SetString();

bogus_col->SetHeader().SetTitle(

);

bogus_col->SetHeader().SetField_name(

);

bogus_col->SetData().SetString();

->SetColumns().push_back(id_col);

->SetColumns().push_back(expand_col);

->SetColumns().push_back(locus_col);

->SetColumns().push_back(locus_tag_col);

->SetColumns().push_back(desc_col);

->SetColumns().push_back(loc_col);

->SetColumns().push_back(comment_col);

->SetColumns().push_back(allele_col);

->SetColumns().push_back(synonym_col);

->SetColumns().push_back(bogus_col);

locus,locus_tag,desc,loc,comment, allele, synonym;

&feat = *fi->GetOriginalSeq_feat();

id_col->SetData().SetId().push_back(

);

expand_col->SetData().SetString().push_back(

);

locus_col->SetData().SetString().push_back(locus);

locus_tag_col->SetData().SetString().push_back(locus_tag);

desc_col->SetData().SetString().push_back(desc);

loc_col->SetData().SetString().push_back(loc);

comment_col->SetData().SetString().push_back(comment);

allele_col->SetData().SetString().push_back(allele);

synonym_col->SetData().SetString().push_back(synonym);

bogus_col->SetData().SetString().push_back(

);

&feat = *fi->GetOriginalSeq_feat();

locus,locus_tag,desc,loc,comment, allele, synonym;

modified =

;

(row < values_table->GetColumn(

).GetData().GetString().

())

(new_locus != locus)

(new_locus.empty())

new_feat->

().SetGene().ResetLocus();

new_feat->

().SetGene().SetLocus(new_locus);

new_locus_tag;

(row < values_table->GetColumn(

).GetData().GetString().

())

(new_locus_tag != locus_tag)

(new_locus_tag.empty())

new_feat->

().SetGene().ResetLocus_tag();

new_feat->

().SetGene().SetLocus_tag(new_locus_tag);

(row < values_table->GetColumn(

).GetData().GetString().

())

(new_desc != desc)

(new_desc.empty())

new_feat->

().SetGene().ResetDesc();

new_feat->

().SetGene().SetDesc() = new_desc;

(row < values_table->GetColumn(

).GetData().GetString().

())

(new_comment != comment)

(new_comment.empty())

(row < values_table->GetColumn(

).GetData().GetString().

())

(new_allele != allele)

new_feat->

().SetGene().ResetAllele();

(!new_allele.empty())

new_feat->

().SetGene().SetAllele(new_allele);

(row < values_table->GetColumn(

).GetData().GetString().

())

(new_synonym != synonym)

new_feat->

().SetGene().ResetSyn();

vector<string> new_values;

(

&

: new_values)

new_feat->

().SetGene().SetSyn().push_back(

);

partial_start_val = partial_start_feat_col->

(feat);

new_partial_start_val;

(row < values_table->GetColumn(

).GetData().GetString().

())

(new_partial_start_val != partial_start_val)

(new_partial_start_val.empty())

partial_stop_val = partial_stop_feat_col->

(feat);

new_partial_stop_val;

(row < values_table->GetColumn(

).GetData().GetString().

())

(new_partial_stop_val != partial_stop_val)

(new_partial_stop_val.empty())

;

wxMessageDialog dlg(

,

(

),

(

),wxOK|wxCANCEL|wxCENTRE);

(dlg.ShowModal() == wxID_OK)

USING_SCOPE(ncbi::objects)

void CreateControls()

Creates the controls and sizers.

void OnClickOk(wxCommandEvent &event)

CSeqTableGridPanel * m_GridPanel

wxBitmap GetBitmapResource(const wxString &name)

CBulkGene()

Constructors.

virtual const CObject * RowToScopedObjects(int row, TConstScopedObjects &objects, CBioseq_Handle &bsh)

static bool ShowToolTips()

Should we show tooltips?

bool Create(wxWindow *parent, wxWindowID id=wxID_ANY, const wxString &caption=_("Gene Editing"), const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxDefaultSize, long style=wxCAPTION|wxRESIZE_BORDER|wxSYSTEM_MENU|wxCLOSE_BOX|wxTAB_TRAVERSAL)

Creation.

CRef< objects::CSeq_table > GetChoices(CRef< objects::CSeq_table > values_table)

void Init()

Initialises member variables.

CApplyEditconvertPanel * m_AecrPanel

bool IsReadOnlyColumn(string column_name)

CRef< CCmdComposite > GetCommandFromValuesTable(CRef< objects::CSeq_table >)

CRef< CCmdComposite > GetCommand()

wxIcon GetIconResource(const wxString &name)

Retrieves icon resources.

CRef< objects::CSeq_table > GetValuesTableFromSeqEntry()

vector< CSeq_feat_Handle > m_FeatHandles

void OnClickCancel(wxCommandEvent &event)

static CRef< CFeatureSeqTableColumnBase > Create(const string &sTitle, objects::CSeqFeatData::ESubtype subtype=objects::CSeqFeatData::eSubtype_any)

virtual void ClearInFeature(objects::CSeq_feat &in_out_feat)

virtual string GetFromFeat(const objects::CSeq_feat &in_out_feat)

virtual bool AddToFeature(objects::CSeq_feat &in_out_feat, const string &newValue, objects::edit::EExistingText existing_text)

CConstRef< objects::CSeq_submit > m_SeqSubmit

Seq-loc and seq-align mapper exceptions.

void MakeColumnReadOnly(int pos, bool val=true)

void SetColumnSizesAndChoices()

void InitColumnCollapse(int col)

CRef< objects::CSeq_table > GetValuesTable()

namespace ncbi::objects::

const CSeqTable_column & GetColumn(CTempString column_name) const

IWorkbench is the central interface in the application framework.

const string kPartialStart

const string kPartialStop

const char * kSequenceIdColLabel

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

#define NCBI_THROW(exception_class, err_code, message)

Generic macro to throw an exception, given the exception class, error code and message string.

vector< SConstScopedObject > TConstScopedObjects

virtual void Assign(const CSerialObject &source, ESerialRecursionMode how=eRecursive)

Set object to copy of another one.

void GetLabel(string *label) const

Appends a label suitable for display (e.g., error messages) label must point to an existing string ob...

TBioseqCore GetBioseqCore(void) const

Get bioseq core structure.

CConstRef< CSeq_entry > GetCompleteSeq_entry(void) const

Complete and get const reference to the seq-entry.

CScope & GetScope(void) const

Get scope this handle belongs to.

CSeq_entry_Handle GetTopLevelEntry(void) const

Get top level Seq-entry handle.

const CSeq_feat_Handle & GetSeq_feat_Handle(void) const

Get original feature handle.

TObjectType * GetPointer(void) const THROWS_NONE

Get pointer,.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static list< string > & Split(const CTempString str, const CTempString delim, list< string > &arr, TSplitFlags flags=0, vector< SIZE_TYPE > *token_pos=NULL)

Split a string using specified delimiters.

static string Join(const TContainer &arr, const CTempString &delim)

Join strings using the specified delimiter.

bool IsSetSyn(void) const

synonyms for locus Check if a value has been assigned to Syn data member.

const TSyn & GetSyn(void) const

Get the Syn member data.

const TDesc & GetDesc(void) const

Get the Desc member data.

bool IsSetLocus_tag(void) const

systematic gene name (e.g., MI0001, ORF0069) Check if a value has been assigned to Locus_tag data mem...

bool IsSetLocus(void) const

Official gene symbol Check if a value has been assigned to Locus data member.

bool IsSetDesc(void) const

descriptive name Check if a value has been assigned to Desc data member.

bool IsSetAllele(void) const

Official allele designation Check if a value has been assigned to Allele data member.

const TLocus_tag & GetLocus_tag(void) const

Get the Locus_tag member data.

const TLocus & GetLocus(void) const

Get the Locus member data.

const TAllele & GetAllele(void) const

Get the Allele member data.

void SetHeader(THeader &value)

Assign a value to Header data member.

vector< CRef< CSeqTable_column > > TColumns

const TString & GetString(void) const

Get the variant data.

const TData & GetData(void) const

Get the Data member data.

bool IsSetComment(void) const

Check if a value has been assigned to Comment data member.

void SetComment(const TComment &value)

Assign a value to Comment data member.

const TLocation & GetLocation(void) const

Get the Location member data.

const TData & GetData(void) const

Get the Data member data.

void SetData(TData &value)

Assign a value to Data data member.

void ResetComment(void)

Reset Comment data member.

const TComment & GetComment(void) const

Get the Comment member data.

const TGene & GetGene(void) const

Get the variant data.

bool IsSetLocation(void) const

feature made from Check if a value has been assigned to Location data member.

<!DOCTYPE HTML >< html > n< header > n< title > PubSeq Gateway Help Page</title > n< style > n table

const struct ncbi::grid::netcache::search::fields::SIZE size

CRef< CSeqTable_column > AddStringColumnToTable(CRef< CSeq_table > table, string label)

void AddValueToColumn(CRef< CSeqTable_column > column, string value, size_t row, edit::EExistingText existing_text=edit::eExistingText_replace_old)

#define row(bind, expected)

@ eExistingText_replace_old

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