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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/bmconst_8h_source.html below:

NCBI C++ ToolKit: include/util/bitset/bmconst.h Source File

1 #ifndef BMCONST__H__INCLUDED__ 2 #define BMCONST__H__INCLUDED__ 32 #if defined(_WIN32) || defined (_WIN64) 35 typedef unsigned long long int id64_t

;

38 typedef unsigned int id_t

;

42 #ifndef BM_DEFAULT_POOL_SIZE 43 # define BM_DEFAULT_POOL_SIZE 4096 47 const unsigned long long id_max32

= 0xFFFFFFFFull;

48 const unsigned long long

id_max48 = 0xFFFFFFFFFFFFull;

105 const unsigned long long id_max

= bm::id_max48;

131 #if defined(BM64OPT) || defined(BM64_SSE4) 242  static const char _p

[];

243  static const unsigned _v

[3];

246 #define BM_VERSION_MAJOR 8 247 #define BM_VERSION_MINOR 0 248 #define BM_VERSION_PATCH 1 251  "BitMagic Library. v.8.0.1 (c) 2002-2025 Anatoliy Kuznetsov."

;

255 #define BM_SCALAR_VERSION (((BM_VERSION_MAJOR) << 16) + ((BM_VERSION_MINOR) << 8) + (BM_VERSION_PATCH)) 269

0, 1, 28, 2, 29, 14, 24, 3, 30, 22, 20, 15, 25, 17, 4, 8,

270

31, 27, 13, 23, 21, 19, 16, 7, 26, 12, 18, 6, 11, 5, 10, 9

279  static const signed char _idx

[256];

284

-1, 0, 1, 1, 2, 2, 2, 2, 3, 3, 3, 3, 3, 3, 3, 3,

285

4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4,

286

5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5,

287

5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5,

288

6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6,

289

6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6,

290

6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6,

291

6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6,

292

7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7,

293

7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7,

294

7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7,

295

7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7,

296

7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7,

297

7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7,

298

7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7,

299

7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7,

316

0,1,1,2,1,2,2,3,1,2,2,3,2,3,3,4,1,2,2,3,2,3,3,4,2,3,3,4,3,4,4,5,

317

1,2,2,3,2,3,3,4,2,3,3,4,3,4,4,5,2,3,3,4,3,4,4,5,3,4,4,5,4,5,5,6,

318

1,2,2,3,2,3,3,4,2,3,3,4,3,4,4,5,2,3,3,4,3,4,4,5,3,4,4,5,4,5,5,6,

319

2,3,3,4,3,4,4,5,3,4,4,5,4,5,5,6,3,4,4,5,4,5,5,6,4,5,5,6,5,6,6,7,

320

1,2,2,3,2,3,3,4,2,3,3,4,3,4,4,5,2,3,3,4,3,4,4,5,3,4,4,5,4,5,5,6,

321

2,3,3,4,3,4,4,5,3,4,4,5,4,5,5,6,3,4,4,5,4,5,5,6,4,5,5,6,5,6,6,7,

322

2,3,3,4,3,4,4,5,3,4,4,5,4,5,5,6,3,4,4,5,4,5,5,6,4,5,5,6,5,6,6,7,

323

3,4,4,5,4,5,5,6,4,5,5,6,5,6,6,7,4,5,5,6,5,6,6,7,5,6,6,7,6,7,7,8

333  static unsigned char const _lut

[16];

339

32U, 31U, 30U, 30U, 29U, 29U, 29U, 29U,

340

28U, 28U, 28U, 28U, 28U, 28U, 28U, 28U

348  static unsigned char const _lut

[37];

354

32, 0, 1, 26, 2, 23, 27, 0, 3, 16, 24, 30, 28, 11,

355

0, 13, 4, 7, 17, 0, 25, 22, 31, 15, 29, 10, 12, 6, 0,

356

21, 14, 9, 5, 20, 8, 19, 18

372

0x1, 0x3, 0x7, 0xf, 0x1f, 0x3f, 0x7f, 0xff, 0x1ff, 0x3ff, 0x7ff,

373

0xfff, 0x1fff, 0x3fff, 0x7fff, 0xffff, 0x1ffff, 0x3ffff, 0x7ffff,

374

0xfffff, 0x1fffff, 0x3fffff, 0x7fffff, 0xffffff, 0x1ffffff, 0x3ffffff,

375

0x7ffffff, 0xfffffff, 0x1fffffff, 0x3fffffff, 0x7fffffff, 0xffffffff

380

0xffffffff, 0xfffffffe, 0xfffffffc, 0xfffffff8, 0xfffffff0,

381

0xffffffe0, 0xffffffc0, 0xffffff80, 0xffffff00, 0xfffffe00,

382

0xfffffc00, 0xfffff800, 0xfffff000, 0xffffe000, 0xffffc000,

383

0xffff8000, 0xffff0000, 0xfffe0000, 0xfffc0000, 0xfff80000,

384

0xfff00000, 0xffe00000, 0xffc00000, 0xff800000, 0xff000000,

385

0xfe000000, 0xfc000000, 0xf8000000, 0xf0000000, 0xe0000000,

386

0xc0000000, 0x80000000

418

{ 32, 96, 128, 512 };

471  unsigned char

*s = (

unsigned char

*)&x;

472

s[0] = 1; s[1] = 2; s[2] = 3; s[3] = 4;

operation

Bit operations.

set_operation

Codes of set operations.

null_support

NULL-able value support.

finalization

copy strategy

strategy

Block allocation strategies.

@ BM_UNSORTED

input set is NOT sorted

@ BM_SORTED

input set is sorted (ascending order)

@ BM_UNKNOWN

sort order unknown

@ BM_SORTED_UNIFORM

sorted and in one block (internal!)

@ use_null

support "non-assigned" or "NULL" logic

@ no_null

do not support NULL values

@ READWRITE

mutable (read-write object)

@ READONLY

immutable (read-only object)

@ BM_BIT

No GAP compression strategy. All new blocks are bit blocks.

@ BM_GAP

GAP compression is ON.

const unsigned set_array_mask

const unsigned set_block_plane_cnt

const unsigned set_block_digest_wave_size

const unsigned gap_max_level

const unsigned set_block_mask

const unsigned set_total_blocks32

const unsigned set_blkblk_mask

const unsigned set_sub_array_size

const unsigned gap_max_bits_cmrz

const unsigned bits_in_array

const unsigned set_total_blocks

ByteOrder

Byte orders recognized by the library.

set_representation

set representation variants

@ set_gap

GAP-RLE compression.

@ set_bitset

Simple bitset.

@ set_array1

array of set 1 values

@ set_array0

array of 0 values

const unsigned bie_cut_off

simd_codes

codes for supported SIMD optimizations

@ simd_sse42

!< Intel SSE2

@ simd_sse2

!< No SIMD or any other optimization

@ simd_avx512

!< Intel AVX2

@ simd_neon

! WASM SIMD 128

@ simd_avx2

!< Intel SSE4.2

@ simd_wasm128

!< Intel AVX512

const unsigned set_block_size_op

const unsigned rs3_half_span

const unsigned gap_levels

const unsigned set_word_shift

const unsigned set_array_size32

const unsigned set_sub_total_bits

const unsigned set_block_digest_pos_shift

const unsigned set_block_size

unsigned long long int id64_t

const unsigned block_waves

const unsigned gap_equiv_len

const unsigned set_block_alloc_size

const unsigned rs3_border0_1

const unsigned gap_max_buff_len

const unsigned rs3_border1

const unsigned gap_max_safe_len

const unsigned set_array_shift

unsigned short gap_word_t

const unsigned rs3_border1_1

const unsigned set_block_plane_size

const unsigned rs3_border0

const unsigned gap_max_bits

const unsigned set_top_array_size

const word_t all_bits_mask

const unsigned set_block_shift

const unsigned set_word_mask

const unsigned bits_in_block

static const unsigned _multiply[32]

static const unsigned _v[3]

MAJOR.MINOR.PATCH version components.

static const char _p[]

Version as a text.

Structure to aid in counting bits table contains count of bits in 0-255 diapason of numbers.

static const unsigned char _count[256]

Structure keeps all-left/right ON bits masks.

static const unsigned _left[32]

static const unsigned _right[32]

Structure keeps index of first right 1 bit for every byte.

static const signed char _idx[256]

Alternative GAP lengths table. Good for for memory saver mode and very sparse bitsets.

static const gap_word_t _len[bm::gap_levels]

Non-linear size growth GAP lengths table.

static const gap_word_t _len[bm::gap_levels]

Default GAP lengths table.

static const gap_word_t _len[bm::gap_levels]

static ByteOrder byte_order()

Structure for LZCNT constants (4-bit)

static unsigned char const _lut[16]

Structure for TZCNT constants.

static unsigned char const _lut[37]


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