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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/block_8cpp_source.html below:

NCBI C++ ToolKit: src/objtools/flatfile/block.cpp Source File

49 #define THIS_FILE "block.cpp" 76 return

std::get<EntryBlk*>(

mData

);

93 if

(holds_alternative<monostate>(

mData

))

95 if

(holds_alternative<TDataBlkList>(

mData

)) {

96 auto

& subblocks = std::get<TDataBlkList>(

mData

);

98

}

else if

(holds_alternative<EntryBlk*>(

mData

)) {

99 auto

& p = std::get<EntryBlk*>(

mData

);

102

}

else if

(holds_alternative<FeatBlk*>(

mData

)) {

103 auto

& p = std::get<FeatBlk*>(

mData

);

106

}

else if

(holds_alternative<const TXmlIndexList*>(

mData

)) {

107 auto

& p = std::get<const TXmlIndexList*>(

mData

);

110 mData

.emplace<monostate>();

127 static bool QSCmp

(QSStructList::const_iterator qs1, QSStructList::const_iterator qs2)

129 int i

StringCmp

(qs1->accession.c_str(), qs2->accession.c_str());

133 return

qs1->version < qs2->version;

164

QSStructList::iterator tqssp = qssp.before_begin();

165

QSStructList::iterator tqsspprev;

168 while

(fgets(

buf

, 1023, pp->

qsfd

)) {

169 if

(

buf

[0] !=

'>'

)

183

tqssp = qssp.emplace_after(tqssp);

185

tqssp->version = q ?

fta_atoi

(q) : 0;

186

tqssp->offset = (size_t)ftell(pp->

qsfd

) -

;

188

tqsspprev->length = tqssp->offset - tqsspprev->offset;

193

tqssp->length = (size_t)ftell(pp->

qsfd

) - tqssp->offset;

200

vector<QSStructList::iterator> qsspp(

count

);

201

tqssp = qssp.begin();

202 for

(j = 0; j <

count

&& tqssp != qssp.end(); j++, ++tqssp)

209 if

(qsspp[j]->accession == qsspp[j + 1]->accession)

210 if

(pp->

accver

false

211

qsspp[j]->version == qsspp[j + 1]->version)

226

vector<IndexblkPtr> ibpp;

227

ibpp.reserve(ibl_size);

228 for

(

const auto

& it : ibl)

229

ibpp.push_back(it.get());

234 for

(ret =

true

, j = 0, k = 0; j <

count

; j++) {

239 for

(; k < ibl_size; k++) {

240 l

StringCmp

(qsspp[j]->accession.c_str(), ibpp[k]->acnum);

247

m = qsspp[j]->version - ibpp[k]->vernum;

254

ibpp[k]->qsoffset = qsspp[j]->offset;

255

ibpp[k]->qslength = qsspp[j]->length;

static bool QSCmp(QSStructList::const_iterator qs1, QSStructList::const_iterator qs2)

static bool QSNoSequenceRecordErr(bool accver, const QSStruct &qssp)

std::forward_list< QSStruct > QSStructList

static bool AccsCmp(const Indexblk *ibp1, const Indexblk *ibp2)

bool QSIndex(ParserPtr pp, const TIndBlkList &ibl, unsigned ibl_size)

std::variant< monostate, TList, EntryBlk *, FeatBlk *, const TXmlIndexList * > mData

EntryBlk * GetEntryData() const

void SetEntryData(EntryBlk *)

struct DataBlk::@1166 mBuf

#define ParFlat_ENTRYNODE

int fta_atoi(string_view sv)

int StringCmp(const char *s1, const char *s2)

size_t StringLen(const char *s)

#define FtaErrPost(sev, level,...)

int16_t Int2

2-byte (16-bit) signed integer

int32_t Int4

4-byte (32-bit) signed integer

char Char

Alias for char.

uint32_t Uint4

4-byte (32-bit) unsigned integer

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

forward_list< unique_ptr< Indexblk > > TIndBlkList

#define ERR_QSCORE_NoSequenceRecord

#define ERR_QSCORE_NoScoreDataFound

#define ERR_QSCORE_RedundantScores

constexpr auto sort(_Init &&init)

const string version

version string

static SLJIT_INLINE sljit_ins l(sljit_gpr r, sljit_s32 d, sljit_gpr x, sljit_gpr b)

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