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NCBI C++ ToolKit: include/objmgr/split/blob_splitter_impl.hpp Source File

vector< CRef<CAnnotPieces> >

;

& range)

;

CID2S_Chunk_Data & GetChunkData(TChunkData &chunk_data, const CPlaceId &place_id)

void AttachToSkeleton(const SChunkInfo &info)

CSeqsRange::TRange TRange

CRef< CMasterSeqSegments > m_Master

map< CPlaceId, CPlace_SplitInfo > TEntries

static size_t CountAnnotObjects(const CSeq_annot &annot)

vector< CAnnotObject_SplitInfo > TAnnotObjects

bool CopyHist(CPlace_SplitInfo &place_info, const CSeq_hist &hist)

CRef< CSeq_annot > MakeSeq_annot(const CSeq_annot &src, const TAnnotObjects &objs)

void SetLoc(CID2S_Seq_loc &loc, const CHandleRangeMap &ranges) const

CBlobSplitterImpl(const SSplitterParams &params)

const CSplitBlob & GetBlob(void) const

map< TChunkId, SChunkInfo > TChunks

void MakeID2Chunk(TChunkId id, const SChunkInfo &info)

bool CopyAnnot(CPlace_SplitInfo &place_info, const CSeq_annot &annot)

CRef< CID2S_Bioseq_set_Ids > MakeBioseq_setIds(const set< int > &ids) const

map< CPlaceId, CRef< CID2S_Chunk_Data > > TChunkData

SChunkInfo * NextChunk(void)

TSeqPos GetLength(const CSeq_data &src) const

void AddToSkeleton(CAnnotPieces &pieces)

bool CopySequence(CPlace_SplitInfo &place_info, TSeqPos seq_length, CSeq_inst &dst, const CSeq_inst &src)

bool IsWhole(const CSeq_id_Handle &id, const TRange &range) const

bool Split(const CSeq_entry &entry)

bool CopyDescr(CPlace_SplitInfo &place_info, TSeqPos seq_length, const CSeq_descr &descr)

CRef< CSeq_entry > m_Skeleton

vector< CRef< CID2S_Chunk_Content > > TChunkContent

vector< CRef< CAnnotPieces > > TPieces

bool CanSplitBioseq(const CBioseq &bioseq) const

CRef< CID2S_Split_Info > m_Split_Info

bool SplitBioseq(CPlace_SplitInfo &place_info, const CBioseq &bioseq)

map< CID2S_Chunk_Id, CRef< CID2S_Chunk > > TID2Chunks

CRef< CID2S_Bioseq_Ids > MakeBioseqIds(const set< CSeq_id_Handle > &ids) const

void MakeID2SObjects(void)

CRef< CID2S_Seq_loc > MakeLoc(const CSeqsRange &range) const

void CopySkeleton(CSeq_entry &dst, const CSeq_entry &src)

const CMasterSeqSegments * GetMaster(void) const

void Add(const SAnnotPiece &piece)

CID2S_Bioseq_set_Ids –.

CID2S_Seq_annot_place_Info –.

CID2S_Seq_descr_Info –.

@Seq_descr.hpp User-defined methods of the data storage class.

namespace ncbi::objects::

Include a standard set of the NCBI C++ Toolkit most basic headers.

unsigned int TSeqPos

Type for sequence locations and lengths.

TObjectType * GetPointerOrNull(void) THROWS_NONE

Get pointer value.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

const struct ncbi::grid::netcache::search::fields::SIZE size

Portable reference counted smart and weak pointers using CWeakRef, CRef, CObject and CObjectEx.

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