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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/blastxml_2Parameters___8hpp_source.html below:

NCBI C++ ToolKit: include/objects/blastxml/Parameters_.hpp Source File

IsSetMatrix(

)

;

CanGetMatrix(

)

;

ResetMatrix(

);

& GetMatrix(

)

;

IsSetExpect(

)

;

CanGetExpect(

)

;

ResetExpect(

);

GetExpect(

)

;

IsSetInclude(

)

;

CanGetInclude(

)

;

ResetInclude(

);

IsSetSc_match(

)

;

CanGetSc_match(

)

;

ResetSc_match(

);

IsSetSc_mismatch(

)

;

CanGetSc_mismatch(

)

;

ResetSc_mismatch(

);

IsSetGap_open(

)

;

CanGetGap_open(

)

;

ResetGap_open(

);

IsSetGap_extend(

)

;

CanGetGap_extend(

)

;

ResetGap_extend(

);

IsSetFilter(

)

;

CanGetFilter(

)

;

ResetFilter(

);

& GetFilter(

)

;

IsSetPattern(

)

;

CanGetPattern(

)

;

ResetPattern(

);

& GetPattern(

)

;

IsSetEntrez_query(

)

;

CanGetEntrez_query(

)

;

ResetEntrez_query(

);

Reset(

);

Base class for all serializable objects.

static char UnassignedByte(void)

void ThrowUnassigned(TMemberIndex index) const

static string UnassignedString(void)

uint32_t Uint4

4-byte (32-bit) unsigned integer

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define NCBI_BLASTXML_EXPORT

const TPattern & GetPattern(void) const

Get the Pattern member data.

TSc_match GetSc_match(void) const

Get the Sc_match member data.

bool IsSetGap_extend(void) const

Gap extension cost (-E) Check if a value has been assigned to Gap_extend data member.

void ResetInclude(void)

Reset Include data member.

void ResetGap_open(void)

Reset Gap_open data member.

CParameters_Base(const CParameters_Base &)

void ResetExpect(void)

Reset Expect data member.

TGap_open & SetGap_open(void)

Assign a value to Gap_open data member.

const TMatrix & GetMatrix(void) const

Get the Matrix member data.

TMatrix & SetMatrix(void)

Assign a value to Matrix data member.

TExpect GetExpect(void) const

Get the Expect member data.

const TFilter & GetFilter(void) const

Get the Filter member data.

TGap_open GetGap_open(void) const

Get the Gap_open member data.

bool CanGetInclude(void) const

Check if it is safe to call GetInclude method.

void ResetGap_extend(void)

Reset Gap_extend data member.

const TEntrez_query & GetEntrez_query(void) const

Get the Entrez_query member data.

bool IsSetMatrix(void) const

Matrix used (-M) Check if a value has been assigned to Matrix data member.

TInclude & SetInclude(void)

Assign a value to Include data member.

Tparent::CMemberIndex< E_memberIndex, 11 > TmemberIndex

bool IsSetGap_open(void) const

Gap opening cost (-G) Check if a value has been assigned to Gap_open data member.

TSc_match & SetSc_match(void)

Assign a value to Sc_match data member.

bool CanGetPattern(void) const

Check if it is safe to call GetPattern method.

bool CanGetFilter(void) const

Check if it is safe to call GetFilter method.

TSc_mismatch GetSc_mismatch(void) const

Get the Sc_mismatch member data.

TPattern & SetPattern(void)

Assign a value to Pattern data member.

bool IsSetExpect(void) const

Expectation threshold (-e) Check if a value has been assigned to Expect data member.

bool IsSetEntrez_query(void) const

Limit of request to Entrez query Check if a value has been assigned to Entrez_query data member.

bool IsSetSc_match(void) const

match score for NT (-r) Check if a value has been assigned to Sc_match data member.

TGap_extend & SetGap_extend(void)

Assign a value to Gap_extend data member.

bool IsSetInclude(void) const

Inclusion threshold (-h) Check if a value has been assigned to Include data member.

bool CanGetEntrez_query(void) const

Check if it is safe to call GetEntrez_query method.

bool CanGetGap_open(void) const

Check if it is safe to call GetGap_open method.

void ResetSc_match(void)

Reset Sc_match data member.

DECLARE_INTERNAL_TYPE_INFO()

bool IsSetFilter(void) const

Filtering options (-F) Check if a value has been assigned to Filter data member.

bool CanGetSc_match(void) const

Check if it is safe to call GetSc_match method.

TFilter & SetFilter(void)

Assign a value to Filter data member.

TInclude GetInclude(void) const

Get the Include member data.

TSc_mismatch & SetSc_mismatch(void)

Assign a value to Sc_mismatch data member.

TGap_extend GetGap_extend(void) const

Get the Gap_extend member data.

bool CanGetSc_mismatch(void) const

Check if it is safe to call GetSc_mismatch method.

CParameters_Base & operator=(const CParameters_Base &)

void ResetSc_mismatch(void)

Reset Sc_mismatch data member.

bool CanGetGap_extend(void) const

Check if it is safe to call GetGap_extend method.

bool CanGetExpect(void) const

Check if it is safe to call GetExpect method.

TExpect & SetExpect(void)

Assign a value to Expect data member.

bool IsSetPattern(void) const

PHI-BLAST pattern Check if a value has been assigned to Pattern data member.

bool CanGetMatrix(void) const

Check if it is safe to call GetMatrix method.

bool IsSetSc_mismatch(void) const

mismatch score for NT (-q) Check if a value has been assigned to Sc_mismatch data member.

TEntrez_query & SetEntrez_query(void)

Assign a value to Entrez_query data member.

const GenericPointer< typename T::ValueType > T2 value

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