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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/blast__vdb__cmd_8cpp.html below:

NCBI C++ ToolKit: src/app/blastvdb/blast_vdb_cmd.cpp File Reference

#include <ncbi_pch.hpp>
#include <corelib/ncbiapp.hpp>
#include <objmgr/util/sequence.hpp>
#include <algo/blast/vdb/vdb2blast_util.hpp>
#include <algo/blast/api/blast_usage_report.hpp>
#include <algo/blast/blastinput/blast_input_aux.hpp>
#include <algo/blast/blastinput/blast_input.hpp>
#include <algo/blast/vdb/vdbalias.hpp>

Include dependency graph for blast_vdb_cmd.cpp:

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Classes class   CBlastVdbCmdApp   The application class. More...
  class   CVdbFastaExtractor   Class to extract FASTA (as returned by the blast_sra library) from SRA data. More...
  Functions   USING_SCOPE (blast)   string  s_GetCSRADBs (const string &db_list, string &not_csra_list)   void  s_PrintStr (const string &str, unsigned int line_width, CNcbiOstream &out)   int  main (int argc, const char *argv[])   Variables   USING_NCBI_SCOPE   static const NStr::TNumToStringFlags  kFlags = NStr::fWithCommas   Function Documentation ◆ main() int main ( int  argc, const char *  argv[]  )

Definition at line 781 of file blast_vdb_cmd.cpp.

References CNcbiApplicationAPI::AppMain(), and eDS_Default.

◆ s_GetCSRADBs() string s_GetCSRADBs ( const string &  db_list, string &  not_csra_list  )

Definition at line 306 of file blast_vdb_cmd.cpp.

References i, CVDBBlastUtil::IsCSRA(), kEmptyStr, and NStr::Split().

Referenced by CBlastVdbCmdApp::x_GetVDBBlastUtil(), and CBlastVdbCmdApp::x_PrintBlastDatabaseInformation().

◆ s_PrintStr() void s_PrintStr ( const string &  str, unsigned int  line_width, CNcbiOstream &  out  )

Definition at line 521 of file blast_vdb_cmd.cpp.

References ITERATE, out(), str(), and NStr::Wrap().

Referenced by CBlastVdbCmdApp::x_PrintBlastDatabaseInformation().

◆ USING_SCOPE() USING_SCOPE ( blast  ) Variable Documentation ◆ kFlags const NStr::TNumToStringFlags kFlags = NStr::fWithCommas static

Definition at line 44 of file blast_vdb_cmd.cpp.

Referenced by BOOST_AUTO_TEST_CASE(), CVDBGraphDataLoader_Impl::GetChunkOnce(), CPsgClientApp::Init(), CAckAlertProcessor::Process(), ReadFastaFileMap(), CBlastDBCmdApp::x_PrintBlastDatabaseInformation(), and CBlastVdbCmdApp::x_PrintBlastDatabaseInformation().

◆ USING_NCBI_SCOPE USING_NCBI_SCOPE

Definition at line 41 of file blast_vdb_cmd.cpp.

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