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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/blast__types_8hpp.html below:

NCBI C++ ToolKit: include/algo/blast/api/blast_types.hpp File Reference

Definitions of special type used in BLAST. More...

enum EProgram {
  eBlastNotSet = 0 , eBlastn , eBlastp , eBlastx ,
  eTblastn , eTblastx , eRPSBlast , eRPSTblastn ,
  eMegablast , eDiscMegablast , ePSIBlast , ePSITblastn ,
  ePHIBlastp , ePHIBlastn , eDeltaBlast , eVecScreen ,
  eMapper , eKBlastp , eBlastProgramMax
} This enumeration is to evolve into a task/program specific list that specifies sets of default parameters to easily conduct searches using BLAST. More...
enum EResultType { eDatabaseSearch , eSequenceComparison } Specifies the style of Seq-aligns that should be built from the internal BLAST data structures. More...

Definitions of special type used in BLAST.

Definition in file blast_types.hpp.

◆ TSeqAlignVector ◆ EProgram

This enumeration is to evolve into a task/program specific list that specifies sets of default parameters to easily conduct searches using BLAST.

Enumerator eBlastNotSet

Not yet set.

eBlastn

Nucl-Nucl (traditional blastn)

eBlastp

Protein-Protein.

eBlastx

Translated nucl-Protein.

eTblastn

Protein-Translated nucl.

eTblastx

Translated nucl-Translated nucl.

eRPSBlast

protein-pssm (reverse-position-specific BLAST)

eRPSTblastn

nucleotide-pssm (RPS blast with translated query)

eMegablast

Nucl-Nucl (traditional megablast)

eDiscMegablast

Nucl-Nucl using discontiguous megablast.

ePSIBlast

PSI Blast.

ePSITblastn

PSI Tblastn.

ePHIBlastp

Protein PHI BLAST.

ePHIBlastn

Nucleotide PHI BLAST.

eDeltaBlast

Delta Blast.

eVecScreen

Vector screening.

eMapper

Jumper alignment for mapping.

eKBlastp

KMER screening and BLASTP.

eBlastProgramMax

Undefined program.

Definition at line 56 of file blast_types.hpp.

◆ EResultType

Specifies the style of Seq-aligns that should be built from the internal BLAST data structures.

Enumerator eDatabaseSearch

Seq-aligns in the style of a database search.

eSequenceComparison

Seq-aligns in the BLAST 2 Sequence style (one alignment per query-subject pair)

Definition at line 267 of file blast_types.hpp.

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