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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/blast__node_8hpp_source.html below:

NCBI C++ ToolKit: include/algo/blast/api/blast_node.hpp Source File

34 #ifndef ALGO_BLAST_API___BLAST_NODE__HPP 35 #define ALGO_BLAST_API___BLAST_NODE__HPP 69  if

(! m_MsgQueue.empty()){

70

rv.

Reset

(m_MsgQueue.front());

71

m_MsgQueue.pop_front();

111  virtual void

*

Main

(

void

) = 0;

115  void

SetDataLoaderPrefix();

141  int GetNumNodes

() {

return static_cast<int>

(m_RegisteredNodes.size());}

147  if

((m_MaxNumNodes < 0) && (m_RegisteredNodes.size() == 0)){

152  void

FormatResults();

159  void

x_WaitForNewEvent();

182  CStreamLineReader

(is), m_QueryBatchSize(batch_size), m_EstAvgQueryLength(est_avg_len), m_QueryCount(0) {}

184  int

GetQueryBatch(

string

& queries,

int

& query_no);

Contains C++ wrapper classes to structures in algo/blast/core as well as some auxiliary functions to ...

Defines to provide correct exporting from BLAST DLL in Windows.

#define NCBI_XBLAST_EXPORT

NULL operations for other cases.

Class to capture message from diag handler.

TActiveNodes m_ActiveNodes

CConditionVariable m_NewEvent

map< int, CRef< CBlastNode > > TRegisteredNodes

CConditionVariable & GetBuzzer()

map< int, CRef< CBlastNodeMailbox > > TPostOffice

map< int, CRef< CBlastNodeMsg > > TFormatQueue

TRegisteredNodes m_RegisteredNodes

map< int, double > TActiveNodes

TFormatQueue m_FormatQueue

CNcbiOstream & m_OutputStream

const int m_QueryBatchSize

const int m_EstAvgQueryLength

CBlastNodeInputReader(CNcbiIstream &is, int batch_size, int est_avg_len)

list< CRef< CBlastNodeMsg > > m_MsgQueue

void UnreadMsg(CRef< CBlastNodeMsg > msg)

CBlastNodeMailbox(int node_num, CConditionVariable &notify)

CConditionVariable & m_Notify

CRef< CBlastNodeMsg > ReadMsg()

CBlastNodeMsg(EMsgType type, void *obj_ptr)

virtual int GetBlastResults(CNcbiOstream &os)=0

string m_DataLoaderPrefix

virtual void * Main(void)=0

Derived (user-created) class must provide a real thread function.

CBlastAppDiagHandler & m_Bah

CRef< CBlastNodeMailbox > m_Mailbox

CBlastAppDiagHandler & GetDiagHandler()

const CNcbiArguments & m_NcbiArgs

const CNcbiArguments & GetArguments()

void SetState(EState state)

void SetQueriesLength(int l)

void SetStatus(int status)

Simple implementation of ILineReader for i(o)streams.

void Reset(void)

Reset reference object.

int64_t Int8

8-byte (64-bit) signed integer

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

IO_PREFIX::ostream CNcbiOstream

Portable alias for ostream.

IO_PREFIX::istream CNcbiIstream

Portable alias for istream.

static SLJIT_INLINE sljit_ins l(sljit_gpr r, sljit_s32 d, sljit_gpr x, sljit_gpr b)

static SLJIT_INLINE sljit_ins msg(sljit_gpr r, sljit_s32 d, sljit_gpr x, sljit_gpr b)

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