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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/blast__jobs_8hpp_source.html below:

NCBI C++ ToolKit: include/gui/packages/pkg_alignment/blast_jobs.hpp Source File

(vector<string>& errors)

;

& tool_name,

vector<string>* RIDs =

,

(vector<string>& errors)

;

CBLASTParams - save user-specified parameters and preferences.

CDataLoadingAppJob - a base class for Jobs loading data into projects.

Base class to build jobs with cancel functionality.

CNetBlastLoadingJob - an application job for loading RIDs from NCBI Net BLAST server.

CProjectService - a service providing API for operations with Workspaces and Projects.

CProjectSelectOptions - describes how new Project Items shall be added to a workspace.

IServiceLocator - an abstract mechanism for locating services.

void GetErrors(vector< string > &errors) const

EJobState x_Run()

this functions performs real work every call to this function does pools each job once,...

virtual CRef< CObject > GetResult()

Returns the Job Result.

CRef< CNetBLASTUIDataSource > m_NetBlastDS

virtual CTimeSpan GetWaitPeriod()

returns a period of time after which the task shall be executed again

vector< CRef< CNetBlastJobDescriptor > > TDescriptors

void x_StartRetrivingTask(const vector< string > &RIDs)

virtual string GetDescr() const

Returns a human readable description of the Job (optional)

virtual EJobState Run()

Function that does all the useful work, called by the Engine.

void x_SetStatusText(const string &text)

vector< CRef< CNetBlastJobDescriptor > > TDescriptors

vector< string > m_Errors

TConstScopedObjects m_SeqLocs

virtual CRef< CObject > GetResult()

Returns the Job Result.

CNetBlastLoadingJob(CNetBLASTUIDataSource &ds, const vector< string > *RIDs=NULL, CScope *scope=NULL)

CNetBlastLoadingJob.

virtual CConstIRef< IAppJobError > GetError()

Returns IAppJobError object describing internal error that caused the Job to fail.

virtual void x_CreateProjectItems()

iterates on the given RIDs and creates Project Items or accumulates error

CNetBlastMonitoringJob(CNetBLASTUIDataSource &ds, IServiceLocator *srv_locator, const string &tool_name, TDescriptors &descriptors)

CNetBlastSubmittingJob.

CNetBlastSubmittingJob(string tool_name, const CBLASTParams &params, CNetBLASTUIDataSource &ds)

CNetBlastSubmittingJob.

virtual CConstIRef< IAppJobError > GetError()

Returns IAppJobError object describing internal error that caused the Job to fail.

virtual void SetLoadingOptions(CSelectProjectOptions &options)

void x_Run()

this fucntions performs real work

virtual CConstIRef< IAppJobProgress > GetProgress()

return progress object, the function shall be synchronized internally.

string m_Descr

mutex to sync our internals

vector< CRef< CNetBlastJobDescriptor > > m_Descriptors

vector< CRef< CNetBlastJobDescriptor > > TDescriptors

CSelectProjectOptions m_LoadingOptions

void GetDescriptors(TDescriptors &descriptors)

vector< string > m_Errors

string m_ToolName

mutex to sync our internals

void x_CreateProjectItemsFromBlastResult(objects::CSeq_align_set &results, CRef< blast::CRemoteBlast > RemoteBlast)

TDescriptors m_Descriptors

virtual string GetDescr() const

Returns a human readable description of the Job (optional)

void SetRIDs(CNetBLASTUIDataSource &ds, const vector< string > &RIDs)

CRef< CAppJobError > m_Error

TDescriptors m_Descriptors

void GetErrors(vector< string > &errors) const

virtual CConstIRef< IAppJobProgress > GetProgress()

return progress object, the function shall be synchronized internally.

vector< string > m_Errors

CRef< CAppJobError > m_Error

IServiceLocator * m_SrvLocator

void x_SetStatusText(const string &text)

virtual EJobState Run()

Function that does all the useful work, called by the Engine.

void x_AddError(const string &error)

EJobState

Job states (describe FSM)

vector< SConstScopedObject > TConstScopedObjects

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

Defines to provide correct exporting from DLLs in Windows.

static void text(MDB_val *v)

Portable reference counted smart and weak pointers using CWeakRef, CRef, CObject and CObjectEx.

The NCBI C++/STL use hints.

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