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NCBI C++ ToolKit: src/app/blast/blast_formatter.cpp File Reference

Stand-alone command line formatter for BLAST. More...

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Stand-alone command line formatter for BLAST.

Definition in file blast_formatter.cpp.

◆ EXIT_CODE__SEARCH_FAILED ◆ EXIT_CODE__SEARCH_PENDING ◆ EXIT_CODE__UNKNOWN_RID ◆ main() ◆ s_ConvertSubjects2TSeqLocVector() ◆ s_InitializeSubject() bool s_InitializeSubject ( CRef< blast::CBlastDatabaseArgs >  db_args, CRef< blast::CBlastOptionsHandle >  opts_hndl, CRef< blast::CLocalDbAdapter > &  db_adapter, CRef< objects::CScope > &  scope  )

Definition at line 258 of file blast_formatter.cpp.

References _ASSERT, CObjectManager::eDefault, eDiag_Critical, eDiag_Warning, CRef< C, Locker >::Empty(), CObjectManager::eNonDefault, CBlastDbDataLoader::eNucleotide, CBlastDbDataLoader::eProtein, eUnknown, CSearchDatabase::GetDatabaseName(), CObjectManager::GetInstance(), SRegisterLoaderInfo< TLoader >::GetLoader(), CSearchDatabase::GetSeqDb(), Info(), CSearchDatabase::IsProtein(), kEmptyStr, CBlastDatabaseArgs::kSubjectsDataLoaderPriority, LOG_POST, NCBI_THROW, CRef< C, Locker >::NotEmpty(), CRemoteBlastDbDataLoader::RegisterInObjectManager(), CGBDataLoader::RegisterInObjectManager(), RegisterOMDataLoader(), CRef< C, Locker >::Reset(), SetDiagPostLevel(), and CReader::SetPreopenConnection().

Referenced by CBlastFormatterApp::PrintFormattedOutput().

◆ USING_SCOPE() ◆ USING_NCBI_SCOPE

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