A RetroSearch Logo

Home - News ( United States | United Kingdom | Italy | Germany ) - Football scores

Search Query:

Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/blast__format_8cpp.html below:

NCBI C++ ToolKit: src/algo/blast/format/blast_format.cpp File Reference

Go to the source code of this file.

Go to the SVN repository for this file.

◆ s_GetBaseName() ◆ s_GetMolType() ◆ s_HasLocalIDs() ◆ s_IsGlobalSeqAlign() bool s_IsGlobalSeqAlign ( CConstRef< objects::CSeq_align_set >  seqalign_set ) ◆ s_SetCloneInfo()

Definition at line 838 of file blast_format.cpp.

References CBlastFormat::SClone::aa, CBlastFormat::SClone::c_gene, CBlastFormat::SClone::chain_type, CBlastFormat::SClone::d_gene, CSeq_id_Base::e_Local, CSeq_id::eContent, FindBestChoice(), CDeflineGenerator::GenerateDefline(), CBioseq_Handle::GetBioseqCore(), CBioseq_Base::GetId(), CIgBlastTabularInfo::GetIgDomains(), CIgBlastTabularInfo::GetIgInfo(), CSeq_id::GetLabel(), CBioseq_Handle::GetSeq_entry_Handle(), CBioseq_Handle::GetSeqId(), i, CBlastFormat::SClone::identity, CBlastFormat::SClone::j_gene, CBlastFormat::SClone::na, CBlastFormat::SClone::productive, CBlastFormat::SClone::seqid, CBlastFormat::SClone::v_gene, CSeq_id_Base::Which(), and CSeq_id::WorstRank().

Referenced by CBlastFormat::PrintOneResultSet(), CBlastFormat::x_PrintAirrRearrangement(), and CBlastFormat::x_PrintIgTabularReport().

◆ s_SetCompBasedStats() ◆ s_SetFlags()

Definition at line 617 of file blast_format.cpp.

References CFormattingArgs::eFlatQueryAnchoredIdentities, CFormattingArgs::eFlatQueryAnchoredNoIdentities, CDisplaySeqalign::eHtml, CDisplaySeqalign::eMasterAnchored, CDisplaySeqalign::eMergeAlign, CFormattingArgs::eQueryAnchoredIdentities, CFormattingArgs::eQueryAnchoredNoIdentities, CDisplaySeqalign::eShowBlastInfo, CDisplaySeqalign::eShowBlastStyleId, CDisplaySeqalign::eShowGi, CDisplaySeqalign::eShowIdentity, CDisplaySeqalign::eShowMiddleLine, CDisplaySeqalign::eShowNoDeflineInfo, CDisplaySeqalign::eShowRawScoreOnly, CDisplaySeqalign::eTranslateNucToNucAlignment, and flags.

Referenced by CBlastFormat::PrintOneResultSet(), and CBlastFormat::PrintPhiResult().

◆ USING_SCOPE() [1/4] USING_SCOPE ( align_format  ) ◆ USING_SCOPE() [2/4] ◆ USING_SCOPE() [3/4] ◆ USING_SCOPE() [4/4] ◆ kHTML_Prefix Initial value:

=

"<HTML>\n"

"<HEAD><TITLE>BLAST Search Results</TITLE></HEAD>\n"

"<BODY BGCOLOR=\"#FFFFFF\" LINK=\"#0000FF\" VLINK=\"#660099\" ALINK=\"#660099\">\n"

"<PRE>\n"

Definition at line 326 of file blast_format.cpp.

Referenced by CBlastFormat::PrintProlog().

◆ kHTML_Suffix ◆ USING_NCBI_SCOPE

RetroSearch is an open source project built by @garambo | Open a GitHub Issue

Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo

HTML: 3.2 | Encoding: UTF-8 | Version: 0.7.4