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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/blast__encoding_8c_source.html below:

NCBI C++ ToolKit: src/algo/blast/core/blast_encoding.c Source File

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88

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15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,

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92

15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,

93

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96

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97

0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,

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99

0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,

100

0, 1,14, 2,13, 0, 0, 4,11, 0, 0,12, 0, 3,15, 0,

101

0, 0, 5, 6, 8, 0, 7, 9, 0,10, 0, 0, 0, 0, 0, 0,

102

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103

0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0};

106

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107

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108

0, 0, 0, 0, 0, 0, 0, 0, 0, 0,25, 0, 0, 0, 0, 0,

109

0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,

110

0, 1, 2, 3, 4, 5, 6, 7, 8, 9,27,10,11,12,13,26,

111

14,15,16,17,18,24,19,20,21,22,23, 0, 0, 0, 0, 0,

112

0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,

113

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116 '-'

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Declarations of static arrays used to define some NCBI encodings to be used in a toolkit independent ...

const Uint1 BLASTNA_TO_NCBI4NA[BLASTNA_SIZE]

Translates between blastna and ncbi4na.

const Uint1 IUPACNA_TO_NCBI4NA[128]

Translates between iupacna and ncbi4na.

#define BLASTAA_SIZE

Size of aminoacid alphabet.

const char NCBI4NA_TO_IUPACNA[BLASTNA_SIZE]

Translates between ncbi4na and iupacna.

const char BLASTNA_TO_IUPACNA[BLASTNA_SIZE]

Translates between blastna and iupacna.

const Uint1 NCBI4NA_TO_BLASTNA[BLASTNA_SIZE]

Translates between ncbi4na and blastna.

const Uint1 AMINOACID_TO_NCBISTDAA[128]

Translates between ncbieaa and ncbistdaa.

#define BLASTNA_SIZE

Size of nucleic acid alphabet.

const Uint1 kProtSentinel

Sentinel byte for protein sequences.

const Uint1 kNuclSentinel

Sentinel nibble for nucleotide sequences.

const Uint1 IUPACNA_TO_BLASTNA[128]

Translates between iupacna and blastna.

const char NCBISTDAA_TO_AMINOACID[BLASTAA_SIZE]

Translates between ncbieaa and ncbistdaa.

uint8_t Uint1

1-byte (8-bit) unsigned integer

#define NULLB

terminating byte of a char* string.

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