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NCBI C++ ToolKit: include/algo/blast/format/blast_async_format.hpp Source File

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QueueResults(

batchNumber, vector<SFormatResultValues>

);

*

(

);

Produce formatted blast output for command line applications.

Interface for reading SRA sequences into blast input.

Interface for converting sources of sequence data into blast sequence input.

Declares CBlastScopeSource class to create properly configured CScope objects to invoke the BLAST dat...

Run as separate thread and format results.

CBlastAsyncFormatThread()

std::map< int, vector< SFormatResultValues > > m_ResultsMap

CBlastAsyncFormatThread(const CBlastAsyncFormatThread &)

virtual void * Main(void)=0

Derived (user-created) class must provide a real thread function.

void Join(void **exit_data=0)

Wait for the thread termination.

CThread & operator=(const CThread &)

#define NCBI_XBLASTFORMAT_EXPORT

NOTE: This file contains work in progress and the APIs are likely to change, please do not rely on th...

Defines BLAST database access classes.

static SLJIT_INLINE sljit_ins br(sljit_gpr target)

Contains query, results and CBlastFormat for one batch.

CRef< CBlastFormat > formatter

Information for formatting.

SFormatResultValues(CRef< CBlastQueryVector > qv, CRef< CSearchResultSet > br, CRef< CBlastFormat > fmt)

CRef< CSearchResultSet > blastResults

Results.

CRef< CBlastQueryVector > qVec

Queries.

Uniform BLAST Search Interface.

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