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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/blast__async__format_8cpp_source.html below:

NCBI C++ ToolKit: src/algo/blast/format/blast_async_format.cpp Source File

51

vector<SFormatResultValues>

results

)

88  const int

kVecSize=5000;

89

vector<vector<SFormatResultValues>> results_v;

90

results_v.resize(kVecSize);

97  for

(std::map<

int

, vector<SFormatResultValues>>::iterator itr=

m_ResultsMap

.begin(); itr !=

m_ResultsMap

.end(); itr++)

99  if

(itr->first < currNum)

101  else if

(itr->first > currNum)

104

results_v[currNum%kVecSize].swap(itr->second);

109  for

(

int

index=lastNum; index<currNum; ++index)

111  for

(vector<SFormatResultValues>::iterator vecitr=results_v[index%kVecSize].begin();

112

vecitr != results_v[index%kVecSize].end(); vecitr++)

115

(*vecitr).formatter->PrintOneResultSet(**

result

, (*vecitr).qVec);

117

results_v[index%kVecSize].clear();

131  return

(

void

*)

NULL

;

CFastMutex blastProcessGuard

void Finalize()

Close queue for printing. No calls to QueueResults allowed after this.

std::map< int, vector< SFormatResultValues > > m_ResultsMap

virtual void * Main(void)

Derived (user-created) class must provide a real thread function.

void Join()

Calls Finalize (if not already called) then CThread::Join(); Should only be called if QueueResults wi...

void QueueResults(int batchNumber, vector< SFormatResultValues > results)

Queue results for printing.

virtual ~CBlastAsyncFormatThread(void)

Search Results for All Queries.

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

#define NCBI_THROW(exception_class, err_code, message)

Generic macro to throw an exception, given the exception class, error code and message string.

static enable_if< is_arithmetic< TNumeric >::value||is_convertible< TNumeric, Int8 >::value, string >::type NumericToString(TNumeric value, TNumToStringFlags flags=0, int base=10)

Convert numeric value to string.

void Lock(void)

Acquire mutex for the current thread with no nesting checks.

void Wait(void)

Wait on semaphore.

void Post(unsigned int count=1)

Increment the semaphore by "count".

void Join(void **exit_data=0)

Wait for the thread termination.

void Unlock(void)

Release mutex with no owner or nesting checks.

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