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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/bioseq__set__info_8hpp_source.html below:

NCBI C++ ToolKit: include/objmgr/impl/bioseq_set_info.hpp Source File

IsEmptySeq_set(

)

;

IsSetId(

)

;

CanGetId(

)

;

IsSetColl(

)

;

CanGetColl(

)

;

& GetColl(

)

;

SetColl(

& v);

ResetColl(

);

IsSetLevel(

)

;

CanGetLevel(

)

;

GetLevel(

)

;

ResetLevel(

);

IsSetClass(

)

;

CanGetClass(

)

;

GetClass(

)

;

ResetClass(

);

IsSetRelease(

)

;

CanGetRelease(

)

;

& GetRelease(

)

;

ResetRelease(

);

IsSetDate(

)

;

CanGetDate(

)

;

& GetDate(

)

;

SetDate(

& v);

ResetDate(

);

IsSetSeq_set(

)

;

CanGetSeq_set(

)

;

& GetSeq_set(

)

;

set_uniqid =

);

set_uniqid =

);

x_AddBioseqChunkId(

chunk_id);

& x_GetBioseqChunkIds()

;

UpdateAnnotIndex(

)

;

x_SetChunkBioseqs(

list<

>& bioseqs,

chunk_id);

CSeq_annot_I;

& x_GetObject(

)

;

x_SetObject(

& obj);

x_GetBioseq_set_Id(

& object_id);

virtual bool x_CanGetDescr(void) const =0

virtual void x_ParentAttach(CSeq_entry_Info &parent)

virtual void x_TSEAttachContents(CTSE_Info &tse)

virtual TDescr & x_SetDescr(void)=0

virtual void x_ResetObjAnnot(void)=0

virtual void x_TSEDetachContents(CTSE_Info &tse)

virtual void x_ParentDetach(CSeq_entry_Info &parent)

virtual bool x_IsSetDescr(void) const =0

virtual void x_DSDetachContents(CDataSource &ds)

void x_DoUpdate(TNeedUpdateFlags flags)

virtual void x_DSAttachContents(CDataSource &ds)

void x_UpdateAnnotIndexContents(CTSE_Info &tse)

virtual void x_ResetDescr(void)=0

virtual TObjAnnot & x_SetObjAnnot(void)=0

virtual const TDescr & x_GetDescr(void) const =0

list< CRef< CSeq_annot > > TObjAnnot

const TDate & GetDate(void) const

bool IsSetClass(void) const

TSeq_set & SetSeq_set(void)

map< TChunkSeqSetsKey, SChunkSeqSet > TChunkSeqSets

const TRelease & GetRelease(void) const

const TSeq_set & GetSeq_set(void) const

bool IsEmptySeq_set(void) const

bool CanGetClass(void) const

void x_DSAttachContents(void)

bool CanGetLevel(void) const

bool CanGetRelease(void) const

bool IsSetSeq_set(void) const

bool IsSetDate(void) const

CBioseq_set_Info(CBioseq_set &seqset)

void SetRelease(TRelease &v)

TChunkSeqSets m_ChunkSeqSets

TObject & x_GetObject(void)

TObject::TRelease TRelease

bool CanGetColl(void) const

TClass GetClass(void) const

vector< CRef< CSeq_entry_Info > > TSeq_set

bool IsSetLevel(void) const

pair< int, TChunkId > TChunkSeqSetsKey

bool CanGetDate(void) const

void x_DSDetachContents(void)

const TColl & GetColl(void) const

bool CanGetId(void) const

bool IsSetColl(void) const

bool CanGetSeq_set(void) const

TLevel GetLevel(void) const

CBioseq_Base_Info TParent

const TId & GetId(void) const

bool IsSetRelease(void) const

@Seq_descr.hpp User-defined methods of the data storage class.

bool x_NeedUpdate(ENeedUpdate flag) const

void x_Update(TNeedUpdateFlags flags) const

vector< TChunkId > TChunkIds

const CSeq_id & GetId(const CSeq_loc &loc, CScope *scope)

If all CSeq_ids embedded in CSeq_loc refer to the same CBioseq, returns the first CSeq_id found,...

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

#define NCBI_XOBJMGR_EXPORT

const struct ncbi::grid::netcache::search::fields::KEY key

CBioseq_set::TSeq_set::iterator first_iter

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