Home - News ( United States | United Kingdom | Italy | Germany ) - Football scores

Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/bioseq__set__info_8cpp_source.html below:

NCBI C++ ToolKit: src/objmgr/bioseq_set_info.cpp Source File

m_BioseqChunks(

.m_BioseqChunks),

.x_UpdateComplete();

(*it)->x_DSAttach(ds);

(*it)->x_DSDetach(ds);

ds.

(obj,

);

(*it)->x_TSEAttach(tse);

(*it)->x_TSEDetach(tse);

( (*it)->x_GetObject().GetParentEntry() != &entry ) {

TSeq_set::const_iterator it2 =

.begin();

(&(*it2)->x_GetObject() == *it);

((*it)->GetParentEntry() == &entry);

(*it)->x_GetObject().ResetParentEntry();

CBioseq_set::TSeq_set::const_iterator it2 = seq_set.begin();

(*it)->x_UpdateCore();

(it2->GetPointer() == &(*it)->x_GetObject());

(

.IsSetSeq_set() ) {

(

.IsSetAnnot() ) {

obj->SetId(

&

(src.

()));

( object_id.

() == object_id.

) {

ret = object_id.

();

(

(index) >=

.size() ) {

obj_seq_set.push_back(obj);

CBioseq_set::TSeq_set::iterator obj_it = obj_seq_set.begin();

(

= 0;

< index; ++

) {

obj_seq_set.insert(obj_it, obj);

( &

->GetParentBioseq_set_Info() !=

) {

TSeq_set::iterator info_it =

CBioseq_set::TSeq_set::iterator obj_it =

find(obj_seq_set.begin(), obj_seq_set.end(), obj);

(obj_it != obj_seq_set.end());

obj_seq_set.erase(obj_it);

CBioseq_set::TSeq_set::iterator insert_iter = obj_seq_set.end();

( chunk_iter->first > chunk_id ) {

seq_index -= chunk_iter->second.count;

insert_iter = chunk_iter->second.first_iter;

(

[seq_index]->GetSeq_entryCore() == *chunk_iter->second.first_iter);

insert_count = bioseqs.size();

(

&

: bioseqs ) {

entry->

(

.GetNCObject());

CBioseq_set::TSeq_set::iterator added_iter = obj_seq_set.insert(insert_iter, entry);

( seq_set.

++ == 0 ) {

kOrderNa = 0;

kOrderNonNa = 1;

has_na =

;

has_non_na =

;

(

&

: bioseqs ) {

(

->GetInst().IsNa() ) {

( has_na && has_non_na ) {

list< CRef<CBioseq> > na_bioseqs, non_na_bioseqs;

(

&

: bioseqs ) {

(

->GetInst().IsNa()? na_bioseqs: non_na_bioseqs).push_back(

);

(!entry->HasParent_Info());

entry->x_ParentAttach(*

);

(&entry->GetParentBioseq_set_Info() ==

);

(&entry->GetParentBioseq_set_Info() ==

);

entry->x_ParentDetach(*

);

(!entry->HasParent_Info());

virtual void x_ParentAttach(CSeq_entry_Info &parent)

virtual void x_TSEAttachContents(CTSE_Info &tse)

virtual void x_TSEDetachContents(CTSE_Info &tse)

virtual void x_ParentDetach(CSeq_entry_Info &parent)

virtual void x_DSDetachContents(CDataSource &ds)

void x_DoUpdate(TNeedUpdateFlags flags)

virtual void x_DSAttachContents(CDataSource &ds)

void x_UpdateAnnotIndexContents(CTSE_Info &tse)

TObjAnnot & x_SetObjAnnot(void)

void x_ParentAttach(CSeq_entry_Info &parent)

virtual ~CBioseq_set_Info(void)

const TDescr & x_GetDescr(void) const

const TChunkIds & x_GetBioseqChunkIds() const

virtual void x_TSEAttachContents(CTSE_Info &tse)

void x_DSAttachContents(void)

void RemoveEntry(CRef< CSeq_entry_Info > entry)

void x_ParentDetach(CSeq_entry_Info &parent)

CConstRef< TObject > GetBioseq_setCore(void) const

virtual void x_UpdateAnnotIndexContents(CTSE_Info &tse)

void x_AddBioseqChunkId(TChunkId chunk_id)

CConstRef< TObject > GetCompleteBioseq_set(void) const

TChunkSeqSets m_ChunkSeqSets

bool x_IsSetDescr(void) const

int GetEntryIndex(const CSeq_entry_Info &entry) const

bool x_CanGetDescr(void) const

static CRef< TObject > sx_ShallowCopy(const TObject &obj)

void x_DoUpdate(TNeedUpdateFlags flags)

void UpdateAnnotIndex(void) const

void x_AttachEntry(CRef< CSeq_entry_Info > info)

void x_DetachEntry(CRef< CSeq_entry_Info > info)

void x_SetObject(TObject &obj)

void x_SetChunkBioseqs2(const list< CRef< CBioseq > > &bioseqs, TChunkSeqSetsKey key)

CRef< CSeq_entry_Info > AddEntry(CSeq_entry &entry, int index, bool set_uniqid=false)

vector< CRef< CSeq_entry_Info > > TSeq_set

void x_DSUnmapObject(CConstRef< TObject > obj, CDataSource &ds)

pair< int, TChunkId > TChunkSeqSetsKey

void x_ResetObjAnnot(void)

friend class CSeq_entry_Info

void x_DSMapObject(CConstRef< TObject > obj, CDataSource &ds)

TDescr & x_SetDescr(void)

void x_DSDetachContents(void)

virtual void x_TSEDetachContents(CTSE_Info &tse)

int x_GetBioseq_set_Id(const CObject_id &object_id)

void x_SetChunkBioseqs(const list< CRef< CBioseq > > &bioseqs, int chunk_id)

CConstRef< CSeq_entry_Info > GetFirstEntry(void) const

const TId & GetId(void) const

void x_Unmap(const CObject *obj, const CTSE_Info_Object *info)

void x_Map(const CObject *obj, const CTSE_Info_Object *info)

Base class for all object manager exceptions.

@Seq_descr.hpp User-defined methods of the data storage class.

TObject & x_GetObject(void)

void ParentizeOneLevel(void)

void x_UpdateCore(void) const

virtual void SetBioObjectId(const CBioObjectId &id)

void x_SetNeedUpdate(TNeedUpdateFlags flags)

CDataSource & GetDataSource(void) const

void x_LoadChunks(const TChunkIds &chunk_ids) const

void x_DetachObject(CTSE_Info_Object &object)

bool HasDataSource(void) const

@ fNeedUpdate_children

all fields of children objects

const CTSE_Info & GetTSE_Info(void) const

bool x_DirtyAnnotIndex(void) const

void x_UpdateComplete(void) const

void x_AttachObject(CTSE_Info_Object &object)

vector< TChunkId > TChunkIds

@ kNeedUpdate_bits

number of bits for fields

void UpdateAnnotIndex(const CSeq_id_Handle &id) const

void x_SetBioseq_setId(int key, CBioseq_set_Info *info)

void x_ResetBioseq_setId(int key, CBioseq_set_Info *info)

CBioObjectId x_IndexBioseq_set(CBioseq_set_Info *)

container_type::iterator iterator

const_iterator begin() const

const_iterator end() const

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

#define NON_CONST_ITERATE(Type, Var, Cont)

Non constant version of ITERATE macro.

#define NCBI_THROW(exception_class, err_code, message)

Generic macro to throw an exception, given the exception class, error code and message string.

CRef< C > Ref(C *object)

Helper functions to get CRef<> and CConstRef<> objects.

void Reset(void)

Reset reference object.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

E_Choice Which(void) const

Which variant is currently selected.

TId GetId(void) const

Get the variant data.

bool IsSetClass(void) const

Check if a value has been assigned to Class data member.

const TDescr & GetDescr(void) const

Get the Descr member data.

TSet & SetSet(void)

Select the variant.

bool IsSetColl(void) const

to identify a collection Check if a value has been assigned to Coll data member.

TClass GetClass(void) const

Get the Class member data.

bool IsSetDate(void) const

Check if a value has been assigned to Date data member.

bool IsSetRelease(void) const

Check if a value has been assigned to Release data member.

const TSet & GetSet(void) const

Get the variant data.

bool IsSetAnnot(void) const

Check if a value has been assigned to Annot data member.

bool IsSetId(void) const

Check if a value has been assigned to Id data member.

bool IsSetSeq_set(void) const

Check if a value has been assigned to Seq_set data member.

const TRelease & GetRelease(void) const

Get the Release member data.

bool IsSetLevel(void) const

nesting level Check if a value has been assigned to Level data member.

bool IsSetDescr(void) const

Check if a value has been assigned to Descr data member.

const TDate & GetDate(void) const

Get the Date member data.

list< CRef< CSeq_annot > > TAnnot

bool IsSet(void) const

Check if variant Set is selected.

const TSeq_set & GetSeq_set(void) const

Get the Seq_set member data.

const TAnnot & GetAnnot(void) const

Get the Annot member data.

const TColl & GetColl(void) const

Get the Coll member data.

list< CRef< CSeq_entry > > TSeq_set

TSeq & SetSeq(void)

Select the variant.

TSeq_set & SetSeq_set(void)

Assign a value to Seq_set data member.

const TId & GetId(void) const

Get the Id member data.

TLevel GetLevel(void) const

Get the Level member data.

const Tdata & Get(void) const

Get the member data.

double value_type

The numeric datatype used by the parser.

CBioseq_set::TSeq_set::iterator first_iter

RetroSearch is an open source project built by @garambo | Open a GitHub Issue

Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo

HTML: 3.2 | Encoding: UTF-8 | Version: 0.7.4